Sequence
atgc intronic sequence ATGC exonic sequencegtgggggtaattttactttgattcttcgtatatataactgtttggaggtaaaaaccacccagcaaataatgatatgtgctgtgaaacagTCTGTCACATACATCGCTGAACATGTGGTTGGAACTGGTTCTTTTGGGGTTGTGTATCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G138676_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os03g62500.1 (Oryza sativa), 3'ss of exon 3
gtgggggtaattttactttgattcttcgtatatataactgtttggaggtaaaaaccacccagcaaataatgatatgtgctgtgaaacagTCTGTCACATACATCGCTGAACATGTGGTTGGAACTGGTTCTTTTGGGGTTGTGTATCAG
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gtaaaaatagtttcgctttcatccttgcaatttgtga-tgtttggccatgaaa-caatgctgataaagtggttatg-gtaatggaacagTCTGTCACTTATATTGCTGAGCATGTGGTCGGAACTGGTTCTTTTGGGGTTGTATATCAG
upper sequence: GRMZM2G138676_T02 (Zea mays), 3'ss of exon 3
lower sequence: Vv12s0035g01060.t01 (Vitis vinifera), 3'ss of exon 2
---------------------------------gtgggggtaattttactttgattcttcgtat--atataactgtttggaggtaaaaaccacccagc--aaataatgatatgtgctgtgaaacagTCTGTCACATACATCGCTGAACATGTGGTTGGAACTGGTTCTTTTGGGGTTGTGTATCAG
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gtaggaagcaaattagtttgtaagattacaatatttgacgtcaattaacataaatcattaatgtcaaggtaaacatcttacataagaatatatatattttggaacatgtcatgtttggatttgcagACTGTTAGTTACATAGCAGAACATGTGGTTGGAACTGGTTCTTTTGGTGTTGTTTTCCAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6095487|gb|AW120154.1|AW120154EST: GTCATGTAATAGCGACTACTGTTCACGGGCGCAACGGCCTGCCTAAACAG TCTGTCACATACATCGCTGAACATGTGGTTGGAACTGGTTCTTTTGGGGTT
genomic: GTCATGTAATAGCGACTACTGTTCACGGGCGCAACGGCCTGCCTAAACAGgtgggggtaa ... tgtgaaacagTCTGTCACATACATCGCTGAACATGTGGTTGGAACTGGTTCTTTTGGGGTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taactgtttggaggtaaaaaccacccagcaaataatgatatgtgctgtgaaacagTCTGTCACATACATCGCTGAACATGTGGTTGGAACTGGTTCTTTTGGGGTTGTGTATCAG
atataac putative branch site (score: 3)
aaataatgatatgt TA-rich tract