1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgagttgacatatatgattattattattactaatctcaacaacaaaagagactttctagggtagtaagcagcccgtttgtttcatctggtctctatctctgaattttccagCGCCAAGGGCCATGGAGAAATGCAAGAACAGAAGCTGAGGAGAAGACGGACGGACGGAAGCTTGCATCTCAGCACCACCAGGGGTGGATGGATGCAAGAA
species | Zea mays |
transcript | GRMZM2G138268_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAAAGGATCAGAAGCCATTGGCCTGG CGCCAAGGGCCATGGAGAAATGCAAGAACAGAAGCTGAGGAGAAGACGGACEST: gi|8102585|gb|AW927285.1|AW927285
genomic: GAAAGGATCAGAAGCCATTGGCCTGGgtgagttgac ... aattttccagCGCCAAGGGCCATGGAGAAATGCAAGAACAGAAGCTGAGGAGAAGACGGAC
EST: CCATTGGCCTGG CGCCAAGGGCCATGGGAGAAATGCAAGAACAGAAGCTGAGGAGAAGACGGAEST: gi|71760821|gb|DR958758.1|DR958758
genomic: CCATTGGCCTGGgtgagttgac ... aattttccagCGCCAAGGGCCATGG-AGAAATGCAAGAACAGAAGCTGAGGAGAAGACGGA
EST: ATCATGCAAGCGCCTTCGGATCATGAAAGGATCAGAAGCCATTGGCCTGG CGCCAAGGGCCATGGAGAAATGCAAGAACAGAAGCTGAGGAGAAGACGGAC
genomic: ATCATGCAAGCGCCTTCGGATCATGAAAGGATCAGAAGCCATTGGCCTGGgtgagttgac ... aattttccagCGCCAAGGGCCATGGAGAAATGCAAGAACAGAAGCTGAGGAGAAGACGGAC
tagggtagtaagcagcccgtttgtttcatctggtctctatctctgaattttccagCGCCAAGGGCCATGGAGAAATGCAAGAACAGAAGCTGAGGAGAAGACGGACGGACGGAAGCTTGCATCTCAGCACCACCAGGGGTGGATGGATGCAAGAA
ttttcc CT-rich tract
tgaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttgacatatatgattattattattactaatctcaacaacaaaagagactttctagggtagtaagcagcccgtttgtttcatctggtctctatctctgaattttccagCGCCAAGGGCCATGGAGAAATGCAAGAACAGAAGCTGAGGAGAAGACGGACGGACGGAAGCTTGCATCTCAGCACCACCAGGGGTGGATGGATGCAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA