1 5' 3' | 2 5' 3' | 3 5' 3' |
...ctgcggggtagttctaaagctctgcagccccgagtgtttatttattaattattgttgaggttgagagaagagggatgacaccacaccatggtttctctagTCGTTCTGATGCAGGAAGCAACGAACCTGGGCTCCGTTCCTCATCATGCAGTCCACCACCTGCCTGCGTCTCTCATTACGGAATCTGGGACTGGAGGAGG
species | Zea mays |
transcript | GRMZM2G138128_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGAGGCTGCAAAGAAGGGTGGTCCTAGGGACACCTAGTCCCTGTATTGTG TCGTTCTGATGCAGGAAGCAACGAACCTGGGCTCCGTTCCTCATCATGCAGEST: gi|19436152|gb|BM952562.1|BM952562
genomic: TGAGGCTGCAAAGAAGGGTGGTCCTAGGGACACCTAGTCCCTGTATTGTGgtattcctcc ... gtttctctagTCGTTCTGATGCAGGAAGCAACGAACCTGGGCTCCGTTCCTCATCATGCAG
EST: TGAGGCTGCAAAGAAGGGTGGTCCTAGGGACACCTAGTCCCTGTATTGTG TCGTTCTGATGCAGGAAGCAACGAACCTGGGCTCCGTTCCTCATCATGCAGEST: gi|18964942|gb|BM661299.1|BM661299
genomic: TGAGGCTGCAAAGAAGGGTGGTCCTAGGGACACCTAGTCCCTGTATTGTGgtattcctcc ... gtttctctagTCGTTCTGATGCAGGAAGCAACGAACCTGGGCTCCGTTCCTCATCATGCAG
EST: TGAGGCTGCAAAGAAGGGTGGTCCTAGGGACACCTAGTCCCTGTATTGTG TCGTTCTGATGCAGGAAGCAACGAACCTGGGCTCCGTTCCTCATCATGCAGEST: gi|89106254|gb|DY576471.1|DY576471
genomic: TGAGGCTGCAAAGAAGGGTGGTCCTAGGGACACCTAGTCCCTGTATTGTGgtattcctcc ... gtttctctagTCGTTCTGATGCAGGAAGCAACGAACCTGGGCTCCGTTCCTCATCATGCAG
EST: TGAGGCTGCAAAGAAGGGTGGTCCTAGGGACACCTAGTCCCTGTATTGTG TCGTTCTGATGCAGGAAGCAACGAACCTGGGCTCCGTTCCTCATCATGCAG
genomic: TGAGGCTGCAAAGAAGGGTGGTCCTAGGGACACCTAGTCCCTGTATTGTGgtattcctcc ... gtttctctagTCGTTCTGATGCAGGAAGCAACGAACCTGGGCTCCGTTCCTCATCATGCAG
taattattgttgaggttgagagaagagggatgacaccacaccatggtttctctagTCGTTCTGATGCAGGAAGCAACGAACCTGGGCTCCGTTCCTCATCATGCAGTCCACCACCTGCCTGCGTCTCTCATTACGGAATCTGGGACTGGAGGAGG
tattaat putative branch site (score: 2)
tttctct putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgcggggtagttctaaagctctgcagccccgagtgtttatttattaattattgttgaggttgagagaagagggatgacaccacaccatggtttctctagTCGTTCTGATGCAGGAAGCAACGAACCTGGGCTCCGTTCCTCATCATGCAGTCCACCACCTGCCTGCGTCTCTCATTACGGAATCTGGGACTGGAGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
ctgcggg
- - - - - - - - - - -ctgcagc
- - - - - - - - - - - - - - - - - - - - - - - - - -ttgttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caccaca