1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaaagcaatgttgttttcctcccgctgaagtcttattgtgaagctatatttcttgccagttctaatatttactcctttccgtttcaatctgtgtgcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTCATTCCTCGCACGCTTTGTGAAGACAGTGATCCTTTGGATGTACTGGTTA
species | Zea mays |
transcript | GRMZM2G137930_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG GTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTCEST: gi|12045955|gb|BF727990.1|BF727990
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG GTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTCEST: gi|211164202|gb|FL365728.1|FL365728
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG GTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTCEST: gi|60352136|gb|DN219109.1|DN219109
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: ATATGAACTTGACAAGAAAACTGGACTGATCAAG GTGGACCGGGTGTTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTCEST: gi|6973369|gb|AW438063.1|AW438063
genomic: ATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: AAATATGAACTTGACAAGAAAACTGGACTGATCAAG GTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTCEST: gi|20301303|gb|BQ164246.1|BQ164246
genomic: AAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG GTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTCEST: gi|60393905|gb|DN226775.1|DN226775
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG GTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTCEST: gi|21760122|gb|BQ635663.1|BQ635663
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG GTGGACCGTGTGCTGTATTCATCAGCTGTTTACCCTCACAACTATGGATTCEST: gi|60396637|gb|DN229505.1|DN229505
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG GTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTCEST: gi|6973370|gb|AW438064.1|AW438064
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG GTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTCEST: gi|60400269|gb|DN233076.1|DN233076
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG GTGGACCGGGTGTTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTCEST: gi|31405950|gb|CD484682.1|CD484682
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG GTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTCEST: gi|211465683|gb|FL011130.1|FL011130
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG GTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTCEST: gi|19822092|gb|BQ048116.1|BQ048116
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: GGCAGC-AGGTTAAATATGAACTTGACAAGTAAAACTGGACTGATCAAG GTGGTACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTEST: gi|76287731|gb|DV027299.1|DV027299
genomic: GGCAGCAAGGTTAAATATGAACTTGACAAG-AAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGG-ACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATT
EST: GACAAGAAAACTGGACTGATCAAG GTGGACCGTGTGCTGTATTCATCAGTTGTTT-CCCTCACAACTATGGATTCEST: gi|6827019|gb|AW330662.1|AW330662
genomic: GACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG GTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTCEST: gi|60395705|gb|DN228575.1|DN228575
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG GTGGACCGGGTGTTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTCEST: gi|71445655|gb|DR826705.1|DR826705
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: CAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG GTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTCEST: gi|71758865|gb|DR956802.1|DR956802
genomic: CAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: AGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG GTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTCEST: gi|76923128|gb|DV169344.1|DV169344
genomic: AGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG GTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTCEST: gi|78179626|gb|DV549999.1|DV549999
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG GTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTCEST: gi|60401073|gb|DN233880.1|DN233880
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: TAAATATGAACTTGACAAGAAAACTGGACTGATCAAG GTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTCEST: gi|60342157|gb|DN209130.1|DN209130
genomic: TAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
EST: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAG GTGGACCGGGTGTTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaaagcaat ... gcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTC
ttcttgccagttctaatatttactcctttccgtttcaatctgtgtgcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTCATTCCTCGCACGCTTTGTGAAGACAGTGATCCTTTGGATGTACTGGTTA
ttctaat putative branch site (score: 2)
agttctaatattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagcaatgttgttttcctcccgctgaagtcttattgtgaagctatatttcttgccagttctaatatttactcctttccgtttcaatctgtgtgcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTCATTCCTCGCACGCTTTGTGAAGACAGTGATCCTTTGGATGTACTGGTTA
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