1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tttatttattttaaaattaattagctcattacataatttgcggatgtgcttttatggttaagctttaggcttgattcagattcacttctatttgtttcagCTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTTGTTGATAATAGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAA
species | Zea mays |
transcript | GRMZM2G135568_T04 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGAAGTCTGTAGGGAGCAAGAACAAGAGCACTCAACACTTTGCTGTTATG CTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTTEST: gi|211033696|gb|FL002057.1|FL002057
genomic: AGAAGTCTGTAGGGAGCAAGAACAAGAGCACTCAACACTTTGCTGTTATGgtgagttatt ... tttgtttcagCTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTT
EST: AGAAGTCTGTAGGGAGCAAGAACAAGAGCACTCAACACTTTGCTGTTATG CTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTTEST: gi|149061138|gb|EE157398.2|EE157398
genomic: AGAAGTCTGTAGGGAGCAAGAACAAGAGCACTCAACACTTTGCTGTTATGgtgagttatt ... tttgtttcagCTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTT
EST: AGAAGTCTGTAGGGAGCAAGAACAAGAGCACTCAACACTTTGCTGTTATG CTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTTEST: gi|211036134|gb|FL002061.1|FL002061
genomic: AGAAGTCTGTAGGGAGCAAGAACAAGAGCACTCAACACTTTGCTGTTATGgtgagttatt ... tttgtttcagCTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTT
EST: AGAAGTCTGTAGGGAGCAAGAACAAGAGCACTCAACACTTTGCTGTTATG CTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTTEST: gi|149061139|gb|EE157399.2|EE157399
genomic: AGAAGTCTGTAGGGAGCAAGAACAAGAGCACTCAACACTTTGCTGTTATGgtgagttatt ... tttgtttcagCTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTT
EST: AGAAGTCTGTAGGGAGCAAGAACAAGAGCACTCAACACTTTGCTGTTATG CTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTTEST: gi|149083911|gb|EE173287.2|EE173287
genomic: AGAAGTCTGTAGGGAGCAAGAACAAGAGCACTCAACACTTTGCTGTTATGgtgagttatt ... tttgtttcagCTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTT
EST: AGAAGTCTGTAGGGAGCAAGAACAAGAGCACTCAACACTTTGCTGTTATG CTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTTEST: gi|211036133|gb|FL002060.1|FL002060
genomic: AGAAGTCTGTAGGGAGCAAGAACAAGAGCACTCAACACTTTGCTGTTATGgtgagttatt ... tttgtttcagCTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTT
EST: AGAAGTCTGTAGGGAGCAAGAACAAGAGCACTCAACACTTTGCTGTTATG CTATTGGAGATGCTTCTGAATAATTGCGGAGAGEST: gi|211033697|gb|FL002058.1|FL002058
genomic: AGAAGTCTGTAGGGAGCAAGAACAAGAGCACTCAACACTTTGCTGTTATGgtgagttatt ... tttgtttcagCTATTGGAGATGCTTCTGAATAATTGCGGAGAG
EST: AGAASTCTGTAGGGAGCAAGAACAAGAGCACTCAACACTTTGCTGTTATG CTATTGGAGATGCT-CTGAAEST: gi|71757754|gb|DR955691.1|DR955691
genomic: AGAAGTCTGTAGGGAGCAAGAACAAGAGCACTCAACACTTTGCTGTTATGgtgagttatt ... tttgtttcagCTATTGGAGATGCTTCTGAA
EST: AGAAGTCTGTAGGGAGCAAGAACAAGAGCACTCAACACTTTGCTGTTATG CTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTT
genomic: AGAAGTCTGTAGGGAGCAAGAACAAGAGCACTCAACACTTTGCTGTTATGgtgagttatt ... tttgtttcagCTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTT
gtgcttttatggttaagctttaggcttgattcagattcacttctatttgtttcagCTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTTGTTGATAATAGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAA
gcttgat putative branch site (score: 5)
cttctatttgtttc putative PPT
tatttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttatttattttaaaattaattagctcattacataatttgcggatgtgcttttatggttaagctttaggcttgattcagattcacttctatttgtttcagCTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTTGTTGATAATAGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA