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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtccctgtttcttcagtcatcttttcctatacgtactcttttcagtcatttccacttctccagtcattgttttgttggattatattattatttgtttttttccaagaccctactgagttctgtccgtgtcaatgcgtctggtggcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAGGCAGTGGGTTCCGTCATGACCAACAAGTACAGCGAGGGGTACCCTGGCG

Basic information

species Zea mays
transcript GRMZM2G135283_T04
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G135283_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os03g52840.2 (Oryza sativa), 3'ss of exon 3
gtccctgtttcttcagtcatcttttcctatacgtactcttttcagtcatttccacttctccagtcattgttttgttggattatattattatttgtttttttccaagaccctactgagttctgtccgtgtcaatgcgtctggtggcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAGGCAGTGGGTTCCGTCATGACCAACAAGTACAGCGAGGGGTACCCTGGCG
                                            || |    ||     | |   |    |  || ||||| | | | | |||| |     || |  |  | |||| ||      ||| ||||  || ||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||
--------------------------------------------gtaaccagcaaccaccaaaaaaaaagtgcgt-ggattgt-tcagtgtttggtcca--ccgacgcattgctgaatt------gtggcaatctgtttggtg-cagGGTCTGGAGCTCATCCCGTCGGAGAACTTCACCTCGGTGTCAGTGATGCAGGCGGTGGGATCCGTCATGACCAACAAGTACAGCGAGGGGTACCCCGGCG

upper sequence: GRMZM2G135283_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA08G37270.1 (Glycine max), 3'ss of exon 3
gtccctgtttcttcagtcatcttttcctatacgtactcttttcagtcatttccacttctccagtcattgttttg-ttggattatattattatttgtttttttccaagaccctactgagttctgtccgtgtcaatgcgtctggtggcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAGGCAGTGGGTTCCGTCATGACCAACAAGTACAGCGAGGGGTACCCTGGCG
                                        |||  |  |||  | ||    | | |   ||     |  | | |||||  || | |  | ||  |       | ||| || | |  || |    | |    |||  |||| || ||  | || ||||| ||||||||||| || ||||| |||||||| || || || || || ||||||||||| ||||| |||||||||||||| |
----------------------------------------ttccctagtttatattttaggattgaaatttgaaactcaagtctattaaaatatatgatgttatag------attgaatttt-tatgttttggggtgaactgtga-agGGGCTAGAATTGATACCGTCAGAGAATTTCACCTCTGTGTCTGTGATGCAAGCGGTTGGATCGGTTATGACCAACAAATACAGTGAGGGGTACCCTGGTG

upper sequence: GRMZM2G135283_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA18G27710.1 (Glycine max), 3'ss of exon 4
gtccctgtttcttcagtcatcttttcctatacgtactcttttcagtcatttccacttctccagtcattgttttgttggattatattattatttgtttttttccaagaccctactgagttctgtccgtgtcaatgcgtctggtggcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAGGCAGTGGGTTCCGTCATGACCAACAAGTACAGCGAGGGGTACCCTGGCG
                                         ||  | ||||  |  |    | | |   ||    |  | | ||||| ||   ||| |  |  |       | ||| || | |  || |    | |    |||  |||| ||||| || || ||||| ||||||||||| || ||||| |||||||| ||||| || || || ||||||||||| ||||| |||||||||||||| |
-----------------------------------------tctctaatttatatcttaggattgaaatttgaaatcaagtctattaataaaagttatgatgtatag----attgactttt-tttgtttttgggtgaactgtga-agGGGCTGGAACTGATACCGTCAGAGAATTTCACTTCTGTGTCTGTGATGCAAGCAGTTGGATCTGTGATGACCAACAAATACAGTGAGGGGTACCCTGGTG

upper sequence: GRMZM2G135283_T01 (Zea mays), 3'ss of exon 3
lower sequence: EDO97448 (Chlamydomonas reinhardtii), 3'ss of exon 4
gtccctgtttcttcagtcatcttttcctatacgtactcttttcagtcatttccacttctccagtcattgttttgttggattatattattatttgtttttttccaagaccctactgagttctgtccgtgtcaatgcgtctggtgg--cagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAGGCAGTGGGTTCCGTCATGACCAACAAGTACAGCGAGGGGTACCCTGGCG
|| |   |       | | ||| || |  | |   ||||   |   ||    ||   || |   |||||     |  |  || |    | |   |   |  |    |||  |||  |  | ||   || |  || || |||     ||||| |||||||| ||||| |||||||| |||  ||| |  || |||||| |||| |||||   ||||||||||||||||||||||||||| ||||| ||||
gtgcgcctgctacggggcttctatttcctt-ccccctctccacctgcacacgcaggcctgcctccattgcagcat--gcctacagc-ctgtccatgcatcactctaaccgcacttggcac-gtaaatggctctg-gtttggccatacagGGCCTGGAGCTGATCCCCTCGGAGAACTTCGTGTCTGCCTCGGTGATGGAGGCGGTGGGCAGCGTCATGACCAACAAGTACAGCGAGGGCTACCCCGGCG

upper sequence: GRMZM2G135283_T01 (Zea mays), 3'ss of exon 3
lower sequence: PP1S51_296V6.1 (Physcomitrella patens), 3'ss of exon 2
gtccctgtttcttcagtcatcttttcctatacgtactcttttcagtcatttccacttctccagtcattgttttgttggattatattattatttgtttttttccaagaccctactgagttctgtccgtgtcaatgcgtctggtggcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAGGCAGTGGGTTCCGTCATGACCAACAAGTACAGCGAGGGGTACCCTGGCG
                  ||  ||||      | ||| ||| || | || |  |  ||   |      ||  |||| |||  |   |||   | ||||    |  |||  |  ||  | ||  |        ||   |   || ||||| || ||| | ||||| || |||||||||||||| || ||||| ||||||||||| ||||||||||||||||| |||||||| || || || |||||  
----------------gtatgatttcta----gcactgtttcca-ttatgtttatgtcagaatatcaagtggtgtttgatgcttgcattgccttttttagggcttgacgatgttgtat-cttcctccactcgtgtcacgattgacagGGCCTCGAGTTGATCCCATCAGAGAATTTCACGTCTGTTTCAGTTATGCAGGCAGTAGGTTCCGTCATGACCAATAAGTACAGTGAAGGATATCCTGGT-

upper sequence: GRMZM2G135283_T01 (Zea mays), 3'ss of exon 3
lower sequence: PP1S21_270V6.1 (Physcomitrella patens), 3'ss of exon 3
-------------gtccctgtttcttca----gtcatcttttcctat-----acgtactcttttcagtcatttccacttctcc--agtcattgttttgttggattatatta-----ttatttgtttttttccaagaccctactgagttctgtccgtgtcaatgcgtctggtg-gcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAGGCAGTGGGTTCCGTCATGACCAACAAGTACAGCGAGGGGTACCCTGGCG
              ||| ||| | || |    ||  | || || | |     |||| |  |   |  ||| |   | |||| |  |   |||   ||||| ||  |   ||     |  |   ||  |||| |  ||| |   || || |         |||   | |  || | ||||||||||| | ||||| || || || ||||| ||  | ||||| |||||||||||||| || |||||||||||||||||||| ||||| ||||| || |
gtttgaagttcgtttccttgtgtttttatctggtgtttttatcatgtttatcacgtgccttgccctttcactagtatttctaccaaaatattaacttgttagaagactgtacggactcgtcaattactttctactacctt---gaattgttgtaacacgaattgcttttctgtgtagGGTCTGGAGTTGATCCCATCAGAAAACTTCACCTCCCTCTCAGTTATGCAGGCAGTGGGGTCAGTCATGACCAACAAGTACAGTGAGGGTTACCCCGGGG

upper sequence: GRMZM2G135283_T01 (Zea mays), 3'ss of exon 3
lower sequence: PP1S79_54V6.1 (Physcomitrella patens), 3'ss of exon 3
------------gtccctgtttcttcagtcatcttttcctatacgtact--------cttttcagtcatttccacttctccagtcattgttttgttggattat-attattatttgttt---ttttccaagaccctactgagttctgtccgtgtcaatgcgtctggtggcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAGGCAGTGGGTTCCGTCATGACCAACAAGTACAGCGAGGGGTACCCTGGCG
            |  ||||| | ||  || | |  |   |||  |  ||          ||  | | || |     | || ||| |  ||  || ||  | || |||  ||||||  |    ||  | ||  |    |||    | |  ||  |  ||||  |     ||||| || ||||| |||||||| |||||||| ||||| || ||||| ||||||||||||||||| ||||||||||| |||||||| || || ||||| || |
gtatgaacatccgctcctgtgttttt-gtaacccctctttatttgagctaaaatttgtcttgtatttatgttggagtatcaagtgacagt--tgatgagtaatgattgatatttgaatgaacttatctagggctgggtgataattctaagttgcgttgcgctt---tccagGGACTTGAGCTGATCCCGTCAGAGAATTTTACGTCCGTATCAGTTATGCAGGCAGTGGGTTCAGTCATGACCAATAAGTACAGTGAAGGTTACCCCGGTG

upper sequence: GRMZM2G135283_T01 (Zea mays), 3'ss of exon 3
lower sequence: EFJ32604 (Selaginella moellendorffii), 3'ss of exon 3
gtccctgtttcttcagtcatcttttcctatacgtactcttttcagtcatttccacttctccagtcattgttttgttggattatattattatttgtttttttccaagaccctactgagttctgtccgtgtcaatgcgtctggt--ggcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAGGCAGTGGGTTCCGTCATGACCAACAAGTACAGCGAGGGGTACCCTGGCG
                                                                                                   ||   | |     ||       |   |   |  ||  |||| |    ||||| |||||||| || || ||||||||||| || ||    ||||| ||||| |||||||| ||| |||||||||||||||| |||||||| || || || |
--------------------------------------------------------------------------------------------------gttggtaaatttcgctatacatagaaggaaactttggatctgttttaccagGGACTGGAGCTAATTCCCTCGGAGAATTTTACTTCAACTTCAGTCATGCAAGCAGTGGGATCCATCATGACCAACAAGTATAGCGAGGGCTATCCAGGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211286152|gb|FL173733.1|FL173733
EST:     ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
genomic: ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtccctgttt ... ctggtggcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
EST: gi|211286141|gb|FL173722.1|FL173722
EST:     ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
genomic: ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtccctgttt ... ctggtggcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
EST: gi|211379736|gb|FL173736.1|FL173736
EST:     ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
genomic: ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtccctgttt ... ctggtggcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
EST: gi|211379741|gb|FL173741.1|FL173741
EST:     ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGACCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
genomic: ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtccctgttt ... ctggtggcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
EST: gi|21987802|gb|BQ779330.1|BQ779330
EST:     ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
genomic: ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtccctgttt ... ctggtggcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
EST: gi|211284346|gb|FL173719.1|FL173719
EST:     ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
genomic: ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtccctgttt ... ctggtggcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
EST: gi|149078907|gb|EE167727.2|EE167727
EST:     ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
genomic: ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtccctgttt ... ctggtggcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
EST: gi|211382375|gb|FL173752.1|FL173752
EST:     ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
genomic: ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtccctgttt ... ctggtggcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
EST: gi|211379738|gb|FL173738.1|FL173738
EST:     ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGANAATTTCACGTCGGTGTCAGTGATGCAG
genomic: ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtccctgttt ... ctggtggcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
EST: gi|211379739|gb|FL173739.1|FL173739
EST:     ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
genomic: ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtccctgttt ... ctggtggcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
EST: gi|211286153|gb|FL173734.1|FL173734
EST:     ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCTGTGTCAGTGATGCAG
genomic: ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtccctgttt ... ctggtggcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
EST: gi|211379748|gb|FL173748.1|FL173748
EST:     ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCTGTGTCAGTGATGCAG
genomic: ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtccctgttt ... ctggtggcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
EST: gi|211286143|gb|FL173724.1|FL173724
EST:     ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
genomic: ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtccctgttt ... ctggtggcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
EST: gi|148973319|gb|EE024404.2|EE024404
EST:     ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
genomic: ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtccctgttt ... ctggtggcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
EST: gi|149012532|gb|EE042603.2|EE042603
EST:     ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
genomic: ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtccctgttt ... ctggtggcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
EST: gi|211379742|gb|FL173742.1|FL173742
EST:     ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
genomic: ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtccctgttt ... ctggtggcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
EST: gi|148946029|gb|EC891328.2|EC891328
EST:     ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
genomic: ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtccctgttt ... ctggtggcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
EST: gi|149048905|gb|EE048404.2|EE048404
EST:     ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
genomic: ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtccctgttt ... ctggtggcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
EST: gi|211379749|gb|FL173749.1|FL173749
EST:     ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
genomic: ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtccctgttt ... ctggtggcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
EST: gi|211286154|gb|FL173735.1|FL173735
EST:     ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAA
genomic: ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtccctgttt ... ctggtggcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCA-
EST: gi|148958252|gb|EC904466.2|EC904466
EST:     ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
genomic: ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtccctgttt ... ctggtggcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
EST: gi|211379740|gb|FL173740.1|FL173740
EST:     ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCTGTGTCAGTGATGCAG
genomic: ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtccctgttt ... ctggtggcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
EST: gi|211379747|gb|FL173747.1|FL173747
EST:     ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
genomic: ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtccctgttt ... ctggtggcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
EST: gi|211379745|gb|FL173745.1|FL173745
EST:     ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
genomic: ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtccctgttt ... ctggtggcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
EST: gi|211379746|gb|FL173746.1|FL173746
EST:     ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
genomic: ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtccctgttt ... ctggtggcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
EST: gi|211286148|gb|FL173729.1|FL173729
EST:     ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
genomic: ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtccctgttt ... ctggtggcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
EST: gi|71299012|gb|DR785498.1|DR785498
EST:     ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
genomic: ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtccctgttt ... ctggtggcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
EST: gi|148930308|gb|EE284699.2|EE284699
EST:     ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
genomic: ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtccctgttt ... ctggtggcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
EST: gi|211379743|gb|FL173743.1|FL173743
EST:     ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
genomic: ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtccctgttt ... ctggtggcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
EST: gi|148969981|gb|EE020895.2|EE020895
EST:     ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
genomic: ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtccctgttt ... ctggtggcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
EST: gi|211286151|gb|FL173732.1|FL173732
EST:     ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
genomic: ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtccctgttt ... ctggtggcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
EST: gi|211284347|gb|FL173720.1|FL173720
EST:     ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
genomic: ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtccctgttt ... ctggtggcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
EST: gi|211286145|gb|FL173726.1|FL173726
EST:     ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
genomic: ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtccctgttt ... ctggtggcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
EST: gi|211382374|gb|FL173751.1|FL173751
EST:     ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
genomic: ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtccctgttt ... ctggtggcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
EST: gi|149081312|gb|EE170425.2|EE170425
EST:     ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
genomic: ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtccctgttt ... ctggtggcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
EST: gi|211379744|gb|FL173744.1|FL173744
EST:     ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
genomic: ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtccctgttt ... ctggtggcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
EST: gi|148947246|gb|EC892606.2|EC892606
EST:     ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
genomic: ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtccctgttt ... ctggtggcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
EST: gi|211379750|gb|FL173750.1|FL173750
EST:     ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
genomic: ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtccctgttt ... ctggtggcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
EST: gi|211379737|gb|FL173737.1|FL173737
EST:     ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
genomic: ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtccctgttt ... ctggtggcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
EST: gi|149089957|gb|EE179246.2|EE179246
EST:     ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
genomic: ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtccctgttt ... ctggtggcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
EST: gi|148945831|gb|EC891120.2|EC891120
EST:     ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
genomic: ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtccctgttt ... ctggtggcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
EST: gi|211286140|gb|FL173721.1|FL173721
EST:     ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG                         GGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG
genomic: ACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtccctgttt ... ctggtggcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 189

TGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtccctgttt ... ctggtggcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAGGCAGTGGGTTCCGTCATGACCAACAAGTACAGCGAGGGGTACCCTGGCG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 184

TGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtccctgttt ... ctggtggcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAGGCAGTGGGTTCCGTCATGACCAACAAGTACAGCGAGGGGTACCCTGGCG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 150

TGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtccctgttt ... ctggtggcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAGGCAGTGGGTTCCGTCATGACCAACAAGTACAGCGAGGGGTACCCTGGCG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 209

TGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAGgtccctgttt ... ctggtggcagGGTCTGGAGCTCATCCCGTCGGAGAATTTCACGTCGGTGTCAGTGATGCAGGCAGTGGGTTCCGTCATGACCAACAAGTACAGCGAGGGGTACCCTGGCG