1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ccaacccttgtagttaattatagggtcttatccatttacttagtaccagagtatcatattatttttcttatctaagcatatctatatattttccttgtagAACTACACAAAAAAGATTCACTTTCTTGCCCATCATCCACTGAATGGACTAGTGATGGCCTTGAAAAGGACCTGTATATTCAATCAAATTCTGTTACTGT
species | Zea mays |
transcript | GRMZM2G135256_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGCTTCTCTGTCACGAAATTTACCTGCCAATGAGAATCAGGATGCTGGCG AACTACACAAAAAAGATTCACTTTCTTGCCCATCATCCACTGAATGGACTAEST: gi|78110849|gb|DV529247.1|DV529247
genomic: TGCTTCTCTGTCACGAAATTTACCTGCCAATGAGAATCAGGATGCTGGCGgtatagctca ... ttccttgtagAACTACACAAAAAAGATTCACTTTCTTGCCCATCATCCACTGAATGGACTA
EST: TGCTTCTCTGTCACGAAATTTACCTGCCAATGAGAATCAGGATGCTGGCG AACTACACAAAAAAGATTCACTTTCTTGCCCATCATCCACTGAATGGACTAEST: gi|32802034|gb|CD954270.1|CD954270
genomic: TGCTTCTCTGTCACGAAATTTACCTGCCAATGAGAATCAGGATGCTGGCGgtatagctca ... ttccttgtagAACTACACAAAAAAGATTCACTTTCTTGCCCATCATCCACTGAATGGACTA
EST: TGCTTCTCTGTCACGAAATTTACCTGCCAATGAGAATCAGGATGCTGGCG AACTACACAAAAAAGATTCACTTTCCTGCCCATCATCCACTGAATGGACTA
genomic: TGCTTCTCTGTCACGAAATTTACCTGCCAATGAGAATCAGGATGCTGGCGgtatagctca ... ttccttgtagAACTACACAAAAAAGATTCACTTTCTTGCCCATCATCCACTGAATGGACTA
ccagagtatcatattatttttcttatctaagcatatctatatattttccttgtagAACTACACAAAAAAGATTCACTTTCTTGCCCATCATCCACTGAATGGACTAGTGATGGCCTTGAAAAGGACCTGTATATTCAATCAAATTCTGTTACTGT
tattttcctt CT-rich tract
atattatttttcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccaacccttgtagttaattatagggtcttatccatttacttagtaccagagtatcatattatttttcttatctaagcatatctatatattttccttgtagAACTACACAAAAAAGATTCACTTTCTTGCCCATCATCCACTGAATGGACTAGTGATGGCCTTGAAAAGGACCTGTATATTCAATCAAATTCTGTTACTGT
ccaaccc
- - - - - - - - - - - - - - - - - - - - - gtaccag