1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gtttcatgcctggatggtgcttactgtcagtgagcattggtgcttataatgaattccttttctgatcatgtgtttttctaaataatttataaatttgcagGAAAGTACTTGCTTGTGTTGTCTGTGGACGTCTAAAAAGTGCATTCCAAATAGCCGCACGAAGTGGAAGTGTCGCTGATGTTCAATATGTTGCCCATCAG
species | Zea mays |
transcript | GRMZM2G135120_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CATAAAGAAAGACCAGATCGCCTTATCGACATGCTAATCAGCAATCACAG GAAAGTACTTGCTTGTGTTGTCTGTGGACGTCTAAAAAGTGCATTCCAAATEST: gi|211316182|gb|FL331847.1|FL331847
genomic: CATAAAGAAAGACCAGATCGCCTTATCGACATGCTAATCAGCAATCACAGgtagctactg ... aaatttgcagGAAAGTACTTGCTTGTGTTGTCTGTGGACGTCTAAAAAGTGCATTCCAAAT
EST: CATAAAGAAAGACCAGATCGCCTTATCGACATGCTAATCAGCAATCACAG GAAAGTACTTGCTTGTGTTGTCTGTGGACGTCTAAAAAGTGCATTCCAAATEST: gi|211470950|gb|FL472658.1|FL472658
genomic: CATAAAGAAAGACCAGATCGCCTTATCGACATGCTAATCAGCAATCACAGgtagctactg ... aaatttgcagGAAAGTACTTGCTTGTGTTGTCTGTGGACGTCTAAAAAGTGCATTCCAAAT
EST: CATAAAGAAAGACCAGATCGCCTTATCGACATGCTAATCAGCAATCACAG GAAAGTACTTGCTTGTGTTGTCTGTGGACGTCTAAAAAGTGCATTCCAAATEST: gi|6022182|gb|AW067110.1|AW067110
genomic: CATAAAGAAAGACCAGATCGCCTTATCGACATGCTAATCAGCAATCACAGgtagctactg ... aaatttgcagGAAAGTACTTGCTTGTGTTGTCTGTGGACGTCTAAAAAGTGCATTCCAAAT
EST: CATAAAGAAAGACCAGATCGCCTTATCGACATGCTAATCAGCAATCACAG GAAAGTACTTGCTTGTGTTGTCTGTGGACGTCTAAAAAGTGCATTCCAAAT
genomic: CATAAAGAAAGACCAGATCGCCTTATCGACATGCTAATCAGCAATCACAGgtagctactg ... aaatttgcagGAAAGTACTTGCTTGTGTTGTCTGTGGACGTCTAAAAAGTGCATTCCAAAT
ataatgaattccttttctgatcatgtgtttttctaaataatttataaatttgcagGAAAGTACTTGCTTGTGTTGTCTGTGGACGTCTAAAAAGTGCATTCCAAATAGCCGCACGAAGTGGAAGTGTCGCTGATGTTCAATATGTTGCCCATCAG
ttctaaa putative branch site (score: 62)
tgatcatgtgtttttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttcatgcctggatggtgcttactgtcagtgagcattggtgcttataatgaattccttttctgatcatgtgtttttctaaataatttataaatttgcagGAAAGTACTTGCTTGTGTTGTCTGTGGACGTCTAAAAAGTGCATTCCAAATAGCCGCACGAAGTGGAAGTGTCGCTGATGTTCAATATGTTGCCCATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- ttcatgc
- - - - -ctggatg
- - - - - - - tggtgct
- - - - - - - - -tgcttac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgttt