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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacactcggaaccttccttctctcgtctgacagcccgagtccttcctgacatggaccgacgccgccgccgccgcaataaattccacacattttcccatccaattccagCGTCGAGGTGATCAACATCTTCACGAAACACGGGGTCGTCAAAGTCCTCGGCACAGCCGTGTGCGTCTCTGGCGCCGTCCTGATGGTCTTCTACCGAGGC

Basic information

species Zea mays
transcript GRMZM2G134930_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G134930_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os06g49500.3 (Oryza sativa), 3'ss of exon 2
gtaacactcggaaccttccttctctcgtctgacagcccgagtccttcctgacatggaccgacgccgccgccgccgcaataaattccacacattttcccatccaattccagCGTCGAGGTGATCAACATCTTCACGAAACACGGGGTCGTCAAAGTCCTCGGCACAGCCGTGTGCGTCTCTGGCGCCGTCCTGATGGTCTTCTACCGAGGC
         | ||  ||  |||     |  || |     |     ||||||  | |  |   | |  |        | | ||||      | || | | |    || ||| || ||||||||||| |||||||| ||  ||||  ||||||| || || ||||| || ||||||||||| || ||||| |||||||| |||||  |||| 
---------gtaaaattggttcatgatttggaaaatt--atctactcctgatgttg--cattggcttcaaatttcaactgaattgagtgaaattacgcgt---gttgcagTGTTGAGGTGATCAATATCTTCACCAAGGACGGCATCGTCAAGGTTCTTGGCACGGCTGTGTGCGTCTCCGGAGCCGTGCTGATGGTGTTCTATAGAGGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|94476183|gb|EB705141.1|EB705141
EST:     TTCCAGCCGGCCATACCGGTGTTCACGTTCCTCCTGGCCGCAATCGTCGG                         CGTCGAGGTGATCAACATCTTCACGAAACACGGGGTCGTCAAAGTCCTCGG
genomic: TTCCAGCCGGCCATACCGGTGTTCACGTTCCTCCTGGCCGCAATCGTCGGgtaacactcg ... ccaattccagCGTCGAGGTGATCAACATCTTCACGAAACACGGGGTCGTCAAAGTCCTCGG
EST: gi|148951696|gb|EC897448.2|EC897448
EST:     TTCCAGCCGGCCATACCGGTGTTCACGTTCCTCCTGGCCGCAATCGTCGG                         CGTCGAGGTGATCAACATCTTCACGAAACACGGGGTCGTCAAAGTCCTCGG
genomic: TTCCAGCCGGCCATACCGGTGTTCACGTTCCTCCTGGCCGCAATCGTCGGgtaacactcg ... ccaattccagCGTCGAGGTGATCAACATCTTCACGAAACACGGGGTCGTCAAAGTCCTCGG
EST: gi|149058751|gb|EE156769.2|EE156769
EST:     TTCCAGCCGGCCATACCGGTGTTCACGTTCCTCCTGGCCGCAATCGTCGG                         CGTCGAGGTGATCAACATCTTCACGAAACACGGGGTCGTCAAAGTCCTCGG
genomic: TTCCAGCCGGCCATACCGGTGTTCACGTTCCTCCTGGCCGCAATCGTCGGgtaacactcg ... ccaattccagCGTCGAGGTGATCAACATCTTCACGAAACACGGGGTCGTCAAAGTCCTCGG
EST: gi|78106564|gb|DV524982.1|DV524982
EST:     TTCCAGCCGGCCATACCGGTGTTCACGTTCCTCCTGGCCGCAATCGTCGG                         CGTCGAGGTGATCAACATCTTCACGAAACACGGGGTCGTCAAAGTCCTCGG
genomic: TTCCAGCCGGCCATACCGGTGTTCACGTTCCTCCTGGCCGCAATCGTCGGgtaacactcg ... ccaattccagCGTCGAGGTGATCAACATCTTCACGAAACACGGGGTCGTCAAAGTCCTCGG
EST: gi|89762148|gb|DY689879.1|DY689879
EST:     TTCCAGCCGGCCATACCGGTGTTCACGTTCCTCCTGGCCGCAATCGTCGG                         CGTCGAGGTGATCAACATCTTCACGAAACACGGGGTCGTCAAAGTCCTCGG
genomic: TTCCAGCCGGCCATACCGGTGTTCACGTTCCTCCTGGCCGCAATCGTCGGgtaacactcg ... ccaattccagCGTCGAGGTGATCAACATCTTCACGAAACACGGGGTCGTCAAAGTCCTCGG
EST: gi|148971932|gb|EE022716.2|EE022716
EST:     TTCCAGCCGGCCATACCGGTGTTCACGTTCCTCCTGGCCGCAATCGTCGG                         CGTCGAGGTGATNCA-CATCTTCACGAAACACGGGGTCGTCAAAGTCCTCG
genomic: TTCCAGCCGGCCATACCGGTGTTCACGTTCCTCCTGGCCGCAATCGTCGGgtaacactcg ... ccaattccagCGTCGAGGTGAT-CAACATCTTCACGAAACACGGGGTCGTCAAAGTCCTCG
EST: gi|148966599|gb|EE017634.2|EE017634
EST:     TTCCAGCCGGCCATACCGGTGTTCACGTTCCTCCTGGCCGCAATCGTCGG                         CGTCGAGGTGATCAACATCTTCACGAAACACGGGGTCGTCAAAGTCCTCGG
genomic: TTCCAGCCGGCCATACCGGTGTTCACGTTCCTCCTGGCCGCAATCGTCGGgtaacactcg ... ccaattccagCGTCGAGGTGATCAACATCTTCACGAAACACGGGGTCGTCAAAGTCCTCGG
EST: gi|18383709|gb|BM416909.1|BM416909
EST:     TTCCAGCCGGCGATACCGGTGTTCACGTTCCTCCTGGCCGCAATCGTCGG                         CGTCGAGGTGATCAACATCTTCNCGAAACATGGGGTCGTCAAAGTCCTCGG
genomic: TTCCAGCCGGCCATACCGGTGTTCACGTTCCTCCTGGCCGCAATCGTCGGgtaacactcg ... ccaattccagCGTCGAGGTGATCAACATCTTCACGAAACACGGGGTCGTCAAAGTCCTCGG
EST: gi|78114582|gb|DV532970.1|DV532970
EST:     TTCCAGCCGGCCATACCGGTGTTCACGTTCCTCCTGGCCGCAATCGTCGG                         CGTCGAGGTGATCAACATCTTCACGAAACACGGGGTCGTCAAAGTCCTCGG
genomic: TTCCAGCCGGCCATACCGGTGTTCACGTTCCTCCTGGCCGCAATCGTCGGgtaacactcg ... ccaattccagCGTCGAGGTGATCAACATCTTCACGAAACACGGGGTCGTCAAAGTCCTCGG
EST: gi|149101866|gb|EE287429.2|EE287429
EST:     TTCCAGCCGGCCATACCGGTGTTCACGTTCCTCCTGGCCGCAATCGTCGG                         CGTCGAGGTGATCAACATCTTCACGAAACACGGGGTCGTCAAAGTCCTCGG
genomic: TTCCAGCCGGCCATACCGGTGTTCACGTTCCTCCTGGCCGCAATCGTCGGgtaacactcg ... ccaattccagCGTCGAGGTGATCAACATCTTCACGAAACACGGGGTCGTCAAAGTCCTCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaccgacgccgccgccgccgcaataaattccacacattttcccatccaattccagCGTCGAGGTGATCAACATCTTCACGAAACACGGGGTCGTCAAAGTCCTCGGCACAGCCGTGTGCGTCTCTGGCGCCGTCCTGATGGTCTTCTACCGAGGC
                                    ttttcccatcc  CT-rich tract
                     aataaatt  TA-rich tract