1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtacatgatggtttcacctcgctttactgcagattgttggcttgctgctttgcgcatagtgtacctgtggttacttctgcttgttgcttgcccgtttgcatttacctggtgctgctattgctttctgttcagAAGGCCATGCAGACCCCGCCTCGCTATCCCACATCAGGAGGTTACATGAGCCCAGGGACGCCACCGTCGATGTACCTTGGTGGTGGTGCTCCCCCATATG
species | Zea mays |
transcript | GRMZM2G134770_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCACTTGCAACATGCGCAACTGCAACCAGTCCAGGCCAGCAGATCACACG --G-CCATGCAGACCCCGCCTCGCTATCCCACATCAGGAGGTTACATGAGCEST: gi|94480167|gb|EB709125.1|EB709125
genomic: CCACTTGCAACATGCGCAACTGCAACCAGTCCAGGCCAGCAGATCACACGgtacatgatg ... ttctgttcagAAGGCCATGCAGACCCCGCCTCGCTATCCCACATCAGGAGGTTACATGAGC
EST: CCACTTGCAACATGCGCAACTGCAACCAGTCCAGGCCAGCAGATCACACG AAGGCCCATGCAGACCCCGCCTCGCTATCCCACATCAGGAGGTTACATGAGEST: gi|6021134|gb|AW066062.1|AW066062
genomic: CCACTTGCAACATGCGCAACTGCAACCAGTCCAGGCCAGCAGATCACACGgtacatgatg ... ttctgttcagAAGGCC-ATGCAGACCCCGCCTCGCTATCCCACATCAGGAGGTTACATGAG
EST: CCACTTGCAACATGCGCAACTGCAACCAGTCCAGGCCAGCAGATCACAC- --GGCCATGCAGACCCCGCCTCGCTATCCCACATCAGGAGGTTACATGAGC
genomic: CCACTTGCAACATGCGCAACTGCAACCAGTCCAGGCCAGCAGATCACACGgtacatgatg ... ttctgttcagAAGGCCATGCAGACCCCGCCTCGCTATCCCACATCAGGAGGTTACATGAGC
tgcttgttgcttgcccgtttgcatttacctggtgctgctattgctttctgttcagAAGGCCATGCAGACCCCGCCTCGCTATCCCACATCAGGAGGTTACATGAGCCCAGGGACGCCACCGTCGATGTACCTTGGTGGTGGTGCTCCCCCATATG
ctttctgttc CT-rich tract
attta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacatgatggtttcacctcgctttactgcagattgttggcttgctgctttgcgcatagtgtacctgtggttacttctgcttgttgcttgcccgtttgcatttacctggtgctgctattgctttctgttcagAAGGCCATGCAGACCCCGCCTCGCTATCCCACATCAGGAGGTTACATGAGCCCAGGGACGCCACCGTCGATGTACCTTGGTGGTGGTGCTCCCCCATATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG