1 5' 3' | 2 5' 3' | 3 5' 3' |
...agggtagtgatttaattagaatagtcaacaatatatgtcgataatattatcacctgactagcccatatgaacacatactgatgccgtttcacatctgcagAAATCTGAACATATGATGTCTAGGCCAACCCGCAAGACATCTTGATGTGGCTGGTGAGGAGGAGAAACATGATCGTAGTGGTTGGTATCGGGCTCAGCAA
species | Zea mays |
transcript | GRMZM2G134747_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATCGTGTGGTGGTCACATTTGATGGGAAGTATCTACCTTACACTGAACAG AAATCTGAACATATGATGTCTAGEST: gi|113571359|gb|DW741030.1|DW741030
genomic: ATCGTGTGGTGGTCACATTTGATGGGAAGTATCTACCTTACACTGAACAGgtccgtgtct ... acatctgcagAAATCTGAACATATGATGTCTAG
EST: GGGAAGTATCTACCTTACACTGAACAG AAATCTGAACATATGATGTCTAGGCCAACCCGCAAGACATCTTGATGTGGCEST: gi|60400889|gb|DN233696.1|DN233696
genomic: GGGAAGTATCTACCTTACACTGAACAGgtccgtgtct ... acatctgcagAAATCTGAACATATGATGTCTAGGCCAACCCGCAAGACATCTTGATGTGGC
EST: ATCGTGTGGTGGTCACATTTGATGGGAAGTATCTACCTTACACTGAACAG AAATCTGAACATATGATGTCTAGGCCAACCCGCAAGACATCTTGATGTGGCEST: gi|211469684|gb|FL432027.1|FL432027
genomic: ATCGTGTGGTGGTCACATTTGATGGGAAGTATCTACCTTACACTGAACAGgtccgtgtct ... acatctgcagAAATCTGAACATATGATGTCTAGGCCAACCCGCAAGACATCTTGATGTGGC
EST: ATCGTGTGGTGGTCACATTTGATGGGAAGTATCTACCTTACACTGAACAG AAATCTGAACATATGATGTCTAGGCCAACCCGCAAGACATCTTGATGTGGCEST: gi|31441069|gb|CD510500.1|CD510500
genomic: ATCGTGTGGTGGTCACATTTGATGGGAAGTATCTACCTTACACTGAACAGgtccgtgtct ... acatctgcagAAATCTGAACATATGATGTCTAGGCCAACCCGCAAGACATCTTGATGTGGC
EST: ATCGTGTGGTGGTCACATTTGATGGGAAGTATCTACCTTACACTGAACAG AAATCTGAACATATGATGTCTAGGCCAACCCGCAAGACATCTTGATGTGGCEST: gi|211191597|gb|FL255435.1|FL255435
genomic: ATCGTGTGGTGGTCACATTTGATGGGAAGTATCTACCTTACACTGAACAGgtccgtgtct ... acatctgcagAAATCTGAACATATGATGTCTAGGCCAACCCGCAAGACATCTTGATGTGGC
EST: ATCGTGTTGTGGTCACATTTGATGGGAAGTATCTACCTTACACTGAACAG AAATCTGAACATATGATGTCTAGGCCAACCCGCAAGACATCTTGATGTGGCEST: gi|78544325|gb|DV621823.1|DV621823
genomic: ATCGTGTGGTGGTCACATTTGATGGGAAGTATCTACCTTACACTGAACAGgtccgtgtct ... acatctgcagAAATCTGAACATATGATGTCTAGGCCAACCCGCAAGACATCTTGATGTGGC
EST: ATCGTGTGGTGGTCACATTTGATGGGAAGTATCTACCTTACACTGAACAG AAATCTGAACATATGATGTCTAGGCCAACCCGCAAGACATCTTGATGTGGCEST: gi|26457359|gb|CA828942.1|CA828942
genomic: ATCGTGTGGTGGTCACATTTGATGGGAAGTATCTACCTTACACTGAACAGgtccgtgtct ... acatctgcagAAATCTGAACATATGATGTCTAGGCCAACCCGCAAGACATCTTGATGTGGC
EST: ATCGTGTGGTGGTCACATTTGATGGGAAGTATCTACCTTACACTGAACAG AAATCTGAACATATGATGTCTAGGCCAACCCGCAAGACATCTTGATGTGGCEST: gi|31405717|gb|CD484449.1|CD484449
genomic: ATCGTGTGGTGGTCACATTTGATGGGAAGTATCTACCTTACACTGAACAGgtccgtgtct ... acatctgcagAAATCTGAACATATGATGTCTAGGCCAACCCGCAAGACATCTTGATGTGGC
EST: ATCGTGTGGTGGTCACATTTGATGGGAAGTATCTACCTTACACTGAACAG AAATCTGAACATATGATGTCTAGGCCAACCCGCAAGACATCTTGATGTGGCEST: gi|60399029|gb|DN231845.1|DN231845
genomic: ATCGTGTGGTGGTCACATTTGATGGGAAGTATCTACCTTACACTGAACAGgtccgtgtct ... acatctgcagAAATCTGAACATATGATGTCTAGGCCAACCCGCAAGACATCTTGATGTGGC
EST: ATCGTGTGGTGGTCACATTTGATGGGAAGTATCTACCTTACACTGAACAG AAATCTGAACATATGATGTCTAGGCCAACCCGCAAGACATCTTGATGTGGCEST: gi|211044293|gb|FL125316.1|FL125316
genomic: ATCGTGTGGTGGTCACATTTGATGGGAAGTATCTACCTTACACTGAACAGgtccgtgtct ... acatctgcagAAATCTGAACATATGATGTCTAGGCCAACCCGCAAGACATCTTGATGTGGC
EST: ATCGTGTGGTGGTCACATTTGATGGGAAGTATCTACCTTACACTGAACAG AAATCTGAACATATGATGTCTAGGCCAACCCGCAAGACATCTTGATGTGGCEST: gi|12046752|gb|BF728891.1|BF728891
genomic: ATCGTGTGGTGGTCACATTTGATGGGAAGTATCTACCTTACACTGAACAGgtccgtgtct ... acatctgcagAAATCTGAACATATGATGTCTAGGCCAACCCGCAAGACATCTTGATGTGGC
EST: ATCGTGTGGTGGTCACATTTGATGGGAAGTATCTACCTTACACTGAACAG AAATCTGAACATATGATGTCTAGGCCAACCCGCAAGACATCTTGATGTGGCEST: gi|31611770|gb|CD568392.1|CD568392
genomic: ATCGTGTGGTGGTCACATTTGATGGGAAGTATCTACCTTACACTGAACAGgtccgtgtct ... acatctgcagAAATCTGAACATATGATGTCTAGGCCAACCCGCAAGACATCTTGATGTGGC
EST: ATCGTGTGGTGGTCACATTTGATGGGAAGTATCTACCTTACACTGAACAG AAATCTGAACATATGATGTCTAGGCCAACCCGCAAGACATCTTGATGEST: gi|211009982|gb|FL448376.1|FL448376
genomic: ATCGTGTGGTGGTCACATTTGATGGGAAGTATCTACCTTACACTGAACAGgtccgtgtct ... acatctgcagAAATCTGAACATATGATGTCTAGGCCAACCCGCAAGACATCTTGATG
EST: ACACTGAACAG AAATCTGAACATATGATGTCTAGGCCAACCCGCAAGACATCTTGATGTGGCEST: gi|30032230|gb|CB834081.1|CB834081
genomic: ACACTGAACAGgtccgtgtct ... acatctgcagAAATCTGAACATATGATGTCTAGGCCAACCCGCAAGACATCTTGATGTGGC
EST: ATCGTGTGGTGGTCACAAAAAATGGGAAGTATCTACCTTACACTGAACAG AAATCTGAACATATGATGTCTAGGCCAACCCGCAAGACATCTTGATGTGGCEST: gi|31406273|gb|CD485005.1|CD485005
genomic: ATCGTGTGGTGGTCACATTTGATGGGAAGTATCTACCTTACACTGAACAGgtccgtgtct ... acatctgcagAAATCTGAACATATGATGTCTAGGCCAACCCGCAAGACATCTTGATGTGGC
EST: ATCGTGTGGTGGTCACATTTGATGGGAAGTATCTACCTTACACTGAACAG AAATCTGAACATATGATGTCTAGGCCAACCCGCAAGACATCTTGATGTGGCEST: gi|7844445|gb|AW787667.1|AW787667
genomic: ATCGTGTGGTGGTCACATTTGATGGGAAGTATCTACCTTACACTGAACAGgtccgtgtct ... acatctgcagAAATCTGAACATATGATGTCTAGGCCAACCCGCAAGACATCTTGATGTGGC
EST: ATCGTGTGGTGGTCACATTTGATGGGAAGTATCTACCTTACACTGAACAG AAATCTGAACATATGATGTCTAGGCCAACCCGCAAGACATCTTGATGTGGCEST: gi|149011217|gb|EE042296.2|EE042296
genomic: ATCGTGTGGTGGTCACATTTGATGGGAAGTATCTACCTTACACTGAACAGgtccgtgtct ... acatctgcagAAATCTGAACATATGATGTCTAGGCCAACCCGCAAGACATCTTGATGTGGC
EST: ATCGTGTGGTGGTCACATTTGATGGGAAGTATCTACCTTACACTGAACAG AAATCTGAACATATGATGTCTAGGCCAACCCGCAAGACATCTTGATGTGGCEST: gi|7844017|gb|AW787344.1|AW787344
genomic: ATCGTGTGGTGGTCACATTTGATGGGAAGTATCTACCTTACACTGAACAGgtccgtgtct ... acatctgcagAAATCTGAACATATGATGTCTAGGCCAACCCGCAAGACATCTTGATGTGGC
EST: ATCGTGTGGTGGTCACATTTGATGGGAAGTATCTACCTTACACTGAACAG AAATCTGAACATATGATGTCTAGGCCAACCCGCAAGACATCTTGAT
genomic: ATCGTGTGGTGGTCACATTTGATGGGAAGTATCTACCTTACACTGAACAGgtccgtgtct ... acatctgcagAAATCTGAACATATGATGTCTAGGCCAACCCGCAAGACATCTTGAT
attatcacctgactagcccatatgaacacatactgatgccgtttcacatctgcagAAATCTGAACATATGATGTCTAGGCCAACCCGCAAGACATCTTGATGTGGCTGGTGAGGAGGAGAAACATGATCGTAGTGGTTGGTATCGGGCTCAGCAA
tactgat putative branch site (score: 125)
atatgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agggtagtgatttaattagaatagtcaacaatatatgtcgataatattatcacctgactagcccatatgaacacatactgatgccgtttcacatctgcagAAATCTGAACATATGATGTCTAGGCCAACCCGCAAGACATCTTGATGTGGCTGGTGAGGAGGAGAAACATGATCGTAGTGGTTGGTATCGGGCTCAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - -caacaat
- - - - - - - - - - - - - - - - - - - - - - - - - cacctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actgatg