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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagccctgaatgcagatgcacagcggtgtgttttttcacacgctgctgtccgatgatcctgcacgcacgatctctttactgatacccgatgcttgtcctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAG

Basic information

species Zea mays
transcript GRMZM2G134708_T01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211139780|gb|FL086553.1|FL086553
EST:     GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGA                         ACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGG-CAGCGGTGGAGAGA
genomic: GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
EST: gi|211139782|gb|FL086555.1|FL086555
EST:     GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGA                         ACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
genomic: GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
EST: gi|149089132|gb|EE178315.2|EE178315
EST:     GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGA                         ACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
genomic: GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
EST: gi|71445023|gb|DR826073.1|DR826073
EST:     GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGA                         ACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
genomic: GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
EST: gi|84980717|gb|DW531066.1|DW531066
EST:     GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGA                         ACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
genomic: GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
EST: gi|32830690|gb|CD970368.1|CD970368
EST:     GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGA                         ACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
genomic: GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
EST: gi|71422582|gb|DR805773.1|DR805773
EST:     GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGA                         ACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
genomic: GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
EST: gi|19057725|gb|BM736392.1|BM736392
EST:     ATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGA                         ACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
genomic: ATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
EST: gi|50327427|gb|CO522553.1|CO522553
EST:     GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGA                         ACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
genomic: GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
EST: gi|33099224|gb|CF059184.1|CF059184
EST:     GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGA-ACCTATTCCCTCAGA                         ACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
genomic: GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
EST: gi|76931161|gb|DV172672.1|DV172672
EST:     GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGA                         ACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
genomic: GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
EST: gi|78077167|gb|DV505601.1|DV505601
EST:     GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGA                         ACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
genomic: GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
EST: gi|211139774|gb|FL086547.1|FL086547
EST:     GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGA                         ACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
genomic: GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
EST: gi|148931363|gb|EC874265.2|EC874265
EST:     GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGA                         ACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
genomic: GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
EST: gi|149111140|gb|EE294635.2|EE294635
EST:     GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCACA                         ACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
genomic: GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
EST: gi|71439293|gb|DR820343.1|DR820343
EST:     GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGA                         ACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
genomic: GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
EST: gi|32838952|gb|CD978633.1|CD978633
EST:     GCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCCTCTTCCCTCAGA                         ACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
genomic: GCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACC-TCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
EST: gi|71298889|gb|DR785439.1|DR785439
EST:     GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGA                         ACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
genomic: GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
EST: gi|32836612|gb|CD976290.1|CD976290
EST:     GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGA                         ACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
genomic: GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
EST: gi|33099029|gb|CF058989.1|CF058989
EST:     GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGA                         ACGCTGCAAGACTACCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
genomic: GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
EST: gi|94478914|gb|EB707872.1|EB707872
EST:     GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGA                         ACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
genomic: GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
EST: gi|148951661|gb|EC897406.2|EC897406
EST:     GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGA                         ACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
genomic: GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
EST: gi|211138836|gb|FL086537.1|FL086537
EST:     GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGA                         ACGCTGCAAGACTGCCAGGCTTCCACACTTGTGTGGGCAGCGGTGGAGAGA
genomic: GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
EST: gi|148939718|gb|EC884396.2|EC884396
EST:     GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGA                         ACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
genomic: GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
EST: gi|211139777|gb|FL086550.1|FL086550
EST:     GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGA                         ACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
genomic: GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
EST: gi|32836750|gb|CD976428.1|CD976428
EST:     GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGA                         ACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
genomic: GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
EST: gi|88751027|gb|DY535168.1|DY535168
EST:     GGCCCCTTATGAGCGCCCTGCACTCAGCAGGGGATACCTCTTCCCTCAAA                         ACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGGGGAGAGA
genomic: GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
EST: gi|211138837|gb|FL086538.1|FL086538
EST:     GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGA                         AGGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
genomic: GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
EST: gi|211138840|gb|FL086541.1|FL086541
EST:     GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGA                         ACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
genomic: GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
EST: gi|211138844|gb|FL086545.1|FL086545
EST:     GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGA                         ACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
genomic: GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
EST: gi|149111386|gb|EE294890.2|EE294890
EST:     GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGA                         ACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
genomic: GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
EST: gi|211139778|gb|FL086551.1|FL086551
EST:     GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCMTCAGA                         ACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
genomic: GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
EST: gi|211139786|gb|FL086559.1|FL086559
EST:     GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGA                         ACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
genomic: GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
EST: gi|211138839|gb|FL086540.1|FL086540
EST:     GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGA                         ACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
genomic: GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
EST: gi|149084652|gb|EE174137.2|EE174137
EST:     GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGA                         ACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
genomic: GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
EST: gi|211138843|gb|FL086544.1|FL086544
EST:     GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGA                         ACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGG-CAGCGGTGGAGAGA
genomic: GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
EST: gi|148941238|gb|EC886132.2|EC886132
EST:     GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGA                         ACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
genomic: GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
EST: gi|148936977|gb|EC881144.2|EC881144
EST:     GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGA                         ACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
genomic: GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
EST: gi|211138838|gb|FL086539.1|FL086539
EST:     GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGA                         ACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
genomic: GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
EST: gi|148940672|gb|EC885484.2|EC885484
EST:     GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGA                         ACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
genomic: GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
EST: gi|84980996|gb|DW531345.1|DW531345
EST:     GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGA                         ACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
genomic: GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
EST: gi|211139779|gb|FL086552.1|FL086552
EST:     GCCACCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGA                         ACGCTGCAAGACTGCCAGGCTTCCACACGTGTGT-GGCAGCGGTGGAGAGA
genomic: GCC-CCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
EST: gi|148937253|gb|EC881434.2|EC881434
EST:     GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGA                         ACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
genomic: GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
EST: gi|148932994|gb|EE285869.2|EE285869
EST:     GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGA                         ACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
genomic: GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
EST: gi|211139781|gb|FL086554.1|FL086554
EST:     GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGA                         ACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
genomic: GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
EST: gi|33467502|gb|CF244551.1|CF244551
EST:     GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGA                         ACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
genomic: GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
EST: gi|148934201|gb|EC878222.2|EC878222
EST:     GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGA                         ACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
genomic: GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
EST: gi|211139776|gb|FL086549.1|FL086549
EST:     GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGA                         ACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
genomic: GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
EST: gi|211139784|gb|FL086557.1|FL086557
EST:     GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGA                         ACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
genomic: GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
EST: gi|211139787|gb|FL086560.1|FL086560
EST:     GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGA                         ACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGG-CAGCGGTGGAGAGA
genomic: GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
EST: gi|211139775|gb|FL086548.1|FL086548
EST:     GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGA                         ACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGG-CAGCGGTGGAGAGA
genomic: GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
EST: gi|211138842|gb|FL086543.1|FL086543
EST:     GGCCCCTTATGAGCGCCCTGCACTCAGCATGGGATACCTCTTCCCTCAGA                         ACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
genomic: GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA
EST: gi|211138845|gb|FL086546.1|FL086546
EST:     GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGA                         ACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGACAGCGGTGGAGAGA
genomic: GGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 44 (downstream exon)
Score: 34

GTGGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 440

GTGGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 537

GTGGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAG


Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 131

GTGGCCCCTTATGAGCGCCCTGCACTCAGCAAGGGATACCTCTTCCCTCAGAgtaagccctg ... ctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgatcctgcacgcacgatctctttactgatacccgatgcttgtcctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAG
                        tactgat  putative branch site (score: 131)
                                       cttgtcct  putative PPT
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagccctgaatgcagatgcacagcggtgtgttttttcacacgctgctgtccgatgatcctgcacgcacgatctctttactgatacccgatgcttgtcctgtcaacagACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA