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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cgtggtaatagagttctggatgaacttatatgatgcttagctgaatcactattgcaggctttgtcccaattagtttatatgtgtcaatctgtttctgcagTACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAG

Basic information

species Zea mays
transcript GRMZM2G134176_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G134176_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g70140.1 (Oryza sativa), 3'ss of exon 3
cgtggtaatagagttctggatgaacttatatgatgcttagctgaatcactattg-caggctt-tgtcccaattagtttatatgtgtcaatctgtttctgcagTACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAG
     |     ||||| |||    ||   |   | |     | |   |  | || || |||| | | |  || | | | | ||| |  |||  ||| |||||||| ||||||||||| | |||||| | ||||| |||||||||||||| |||||||| || |||| | | || || ||||||||||| |||
--aaattcccaagttcaggacatgctcggaacttacaggtttaaggaatcagtgtcaagcttgtcttctgatcattatgtctgttttcatccatttttgcagTACTTGCGTGACTATTCCACATTTTCTGCTACTGCTCGCTACTGGACGGAGGCCTTTGCAAAGAATTCCTCCACCGGCATGGAAGAAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38229682|gb|CF919995.1|CF919995
EST:     TTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCCCCAACAG                         TACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGA
genomic: TTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCAC-AACAGgtctaaactg ... gtttctgcagTACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGA
EST: gi|211011836|gb|FL066262.1|FL066262
EST:     TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAG                         TACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
genomic: TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAGgtctaaactg ... gtttctgcagTACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
EST: gi|19822046|gb|BQ048070.1|BQ048070
EST:     TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCCCAACAG                         TACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
genomic: TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAGgtctaaactg ... gtttctgcagTACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
EST: gi|76288098|gb|DV027666.1|DV027666
EST:     TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAG                         TACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
genomic: TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAGgtctaaactg ... gtttctgcagTACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
EST: gi|78078206|gb|DV506621.1|DV506621
EST:     TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAG                         TACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
genomic: TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAGgtctaaactg ... gtttctgcagTACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
EST: gi|5929011|gb|AW056303.1|AW056303
EST:     TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGGTGNTGCCCAACAG                         TACCTGCGTGACTATCCAACATTTGCCGNTACGGCTCGCTACTGGACAGAG
genomic: TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAGgtctaaactg ... gtttctgcagTACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
EST: gi|15427145|gb|BI542967.1|BI542967
EST:     TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAG                         TACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
genomic: TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAGgtctaaactg ... gtttctgcagTACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
EST: gi|148935183|gb|EC879220.2|EC879220
EST:     TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAG                         TACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
genomic: TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAGgtctaaactg ... gtttctgcagTACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
EST: gi|60348326|gb|DN215299.1|DN215299
EST:     TTTCTTCTCCTGCACCTGATGATCCTCACGATGCTGTTGTTGCACAACAG                         TACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
genomic: TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAGgtctaaactg ... gtttctgcagTACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
EST: gi|31348575|gb|CD432932.1|CD432932
EST:     TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCCCAACAG                         TACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
genomic: TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAGgtctaaactg ... gtttctgcagTACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
EST: gi|50336275|gb|CO531401.1|CO531401
EST:     ACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAG                         TACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
genomic: ACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAGgtctaaactg ... gtttctgcagTACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
EST: gi|211011839|gb|FL066265.1|FL066265
EST:     TTTCTTCTCCTGCACCTGATGATCCTCANGATGCTGTTGTTGCACAACAG                         TACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
genomic: TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAGgtctaaactg ... gtttctgcagTACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
EST: gi|60350390|gb|DN217363.1|DN217363
EST:     TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAG                         TACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
genomic: TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAGgtctaaactg ... gtttctgcagTACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
EST: gi|74243460|gb|DT651374.1|DT651374
EST:     TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAG                         TACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
genomic: TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAGgtctaaactg ... gtttctgcagTACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
EST: gi|16926434|gb|BM079502.1|BM079502
EST:     TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAG                         TACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
genomic: TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAGgtctaaactg ... gtttctgcagTACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
EST: gi|92088246|gb|EB484477.1|EB484477
EST:     TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCCCAACAG                         TACCTGCGTGACTATCNAACATTTGCCGCTACGGCTCGCTACTG
genomic: TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAGgtctaaactg ... gtttctgcagTACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTG
EST: gi|211181395|gb|FL226956.1|FL226956
EST:     TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCCCAACAG                         TACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
genomic: TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAGgtctaaactg ... gtttctgcagTACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
EST: gi|71333057|gb|DR803563.1|DR803563
EST:     TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAG                         TACCTGCGTGACTATCCAACATTTGCCGTTACGGCTCGCTACTGGACAGAG
genomic: TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAGgtctaaactg ... gtttctgcagTACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
EST: gi|5917536|gb|AW054339.1|AW054339
EST:     TTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCCCAACAG                         TACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
genomic: TTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAGgtctaaactg ... gtttctgcagTACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
EST: gi|211183797|gb|FL226969.1|FL226969
EST:     TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAG                         TACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
genomic: TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAGgtctaaactg ... gtttctgcagTACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
EST: gi|71596377|gb|DR907128.1|DR907128
EST:     TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCCCAACAG                         TACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGG
genomic: TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAGgtctaaactg ... gtttctgcagTACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGG
EST: gi|19822034|gb|BQ048058.1|BQ048058
EST:     TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCCCAACAG                         TACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
genomic: TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAGgtctaaactg ... gtttctgcagTACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
EST: gi|78104812|gb|DV523230.1|DV523230
EST:     TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAG                         TACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
genomic: TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAGgtctaaactg ... gtttctgcagTACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
EST: gi|76917766|gb|DV166996.1|DV166996
EST:     TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAG                         TACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
genomic: TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAGgtctaaactg ... gtttctgcagTACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
EST: gi|71305839|gb|DR789045.1|DR789045
EST:     TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAG                         TACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
genomic: TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAGgtctaaactg ... gtttctgcagTACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
EST: gi|15499307|gb|BI595820.1|BI595820
EST:     TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAG                         TACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
genomic: TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAGgtctaaactg ... gtttctgcagTACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
EST: gi|71333059|gb|DR803564.1|DR803564
EST:     TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAG                         TACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
genomic: TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAGgtctaaactg ... gtttctgcagTACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
EST: gi|148950957|gb|EC896595.2|EC896595
EST:     TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAG                         TACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
genomic: TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAGgtctaaactg ... gtttctgcagTACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
EST: gi|60338191|gb|DN205164.1|DN205164
EST:     TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAG                         TACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
genomic: TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAGgtctaaactg ... gtttctgcagTACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
EST: gi|76917765|gb|DV166995.1|DV166995
EST:     TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAG                         TACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
genomic: TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAGgtctaaactg ... gtttctgcagTACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
EST: gi|50336276|gb|CO531402.1|CO531402
EST:     TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAG                         TACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
genomic: TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAGgtctaaactg ... gtttctgcagTACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
EST: gi|29544832|gb|CB605440.1|CB605440
EST:     TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAG                         TACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
genomic: TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAGgtctaaactg ... gtttctgcagTACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
EST: gi|60394349|gb|DN227219.1|DN227219
EST:     TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAG                         TACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
genomic: TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAGgtctaaactg ... gtttctgcagTACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
EST: gi|32165058|gb|CD670376.1|CD670376
EST:     TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAG                         TACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
genomic: TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAGgtctaaactg ... gtttctgcagTACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
EST: gi|29576715|gb|CB616827.1|CB616827
EST:     TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAG                         TACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
genomic: TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAGgtctaaactg ... gtttctgcagTACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
EST: gi|71761684|gb|DR959621.1|DR959621
EST:     TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAG                         TACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
genomic: TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAGgtctaaactg ... gtttctgcagTACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
EST: gi|211011837|gb|FL066263.1|FL066263
EST:     TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGKTGCACAACAG                         TACCTGCGTGACT
genomic: TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAGgtctaaactg ... gtttctgcagTACCTGCGTGACT
EST: gi|67021220|gb|CO449969.1|CO449969
EST:     TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAG                         TACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
genomic: TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAGgtctaaactg ... gtttctgcagTACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
EST: gi|211011838|gb|FL066264.1|FL066264
EST:     TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAG                         TACCTGCGTGACTATCCAACATTTGCC
genomic: TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAGgtctaaactg ... gtttctgcagTACCTGCGTGACTATCCAACATTTGCC
EST: gi|4681176|gb|AI629846.1|AI629846
EST:     ACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAG                         TACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
genomic: ACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAGgtctaaactg ... gtttctgcagTACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
EST: gi|78104811|gb|DV523229.1|DV523229
EST:     TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAG                         TACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG
genomic: TTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAGgtctaaactg ... gtttctgcagTACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 39 (downstream exon)
Score: 81

GAGCCCAGCCCTTACCTTGAAGACTGCGCTCCTTTCCCTTCAAGCTCTGCTTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAGgtctaaactg ... gtttctgcagTACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAG


Block sizes: 44 (upstream exon), 47 (downstream exon)
Score: 109

GAGCCCAGCCCTTACCTTGAAGACTGCGCTCCTTTCCCTTCAAGCTCTGCTTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAGgtctaaactg ... gtttctgcagTACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 94

GAGCCCAGCCCTTACCTTGAAGACTGCGCTCCTTTCCCTTCAAGCTCTGCTTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAGgtctaaactg ... gtttctgcagTACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAG


Block sizes: 47 (upstream exon), 45 (downstream exon)
Score: 86

GAGCCCAGCCCTTACCTTGAAGACTGCGCTCCTTTCCCTTCAAGCTCTGCTTTCTTCTCCTGCACCTGATGATCCTCAGGATGCTGTTGTTGCACAACAGgtctaaactg ... gtttctgcagTACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcactattgcaggctttgtcccaattagtttatatgtgtcaatctgtttctgcagTACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAG
                                          tctgtttct  CT-rich tract
                      aattagtttatatgt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cgtggtaatagagttctggatgaacttatatgatgcttagctgaatcactattgcaggctttgtcccaattagtttatatgtgtcaatctgtttctgcagTACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA