1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...taactctctaattttatttcttcctgctaatctaaaaaaaactttgtttaattgtctgttcaagtaaagtgaaatttcctgtccaacttctgcattgtagCCAAATGAAAGCCTGTATGAGCAGAAGCCCGAAGAAACAGCTCCTGTCCTGCCATCATCGGTGATTGCAAGTACTACAGCTAGGAGCAAACCCCATACTT
species | Zea mays |
transcript | GRMZM2G134045_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGCCTGGAAATAAGACCGGCGGACTTGGTGCACGGAAGCTTACATCAAAG CCAAATGAAAGCCTGTATGEST: gi|32869081|gb|CF008763.1|CF008763
genomic: AGCCTGGAAATAAGACCGGCGGACTTGGTGCACGGAAGCTTACATCAAAGgtatgcgtta ... tgcattgtagCCAAATGAAAGCCTGTATG
EST: AGCCTGGAAATAAGACCGGCGGACTTGGTGCACGGAAGCTTACATCAAAG CCAAATGAAAGCCTGTATGAGCAGAAGCCCGAAGAAACAGCTCCTGTCCTGEST: gi|32909005|gb|CF013817.1|CF013817
genomic: AGCCTGGAAATAAGACCGGCGGACTTGGTGCACGGAAGCTTACATCAAAGgtatgcgtta ... tgcattgtagCCAAATGAAAGCCTGTATGAGCAGAAGCCCGAAGAAACAGCTCCTGTCCTG
EST: AGCCTGGAAATAAGACCGGCGGACTTGGTGCACGGAAGCTTACATCAAAG CCAAATGAAAGCCTGTATGAGCAGAAGCCCGAAGAAACAGCTCCTGTCCTG
genomic: AGCCTGGAAATAAGACCGGCGGACTTGGTGCACGGAAGCTTACATCAAAGgtatgcgtta ... tgcattgtagCCAAATGAAAGCCTGTATGAGCAGAAGCCCGAAGAAACAGCTCCTGTCCTG
gtttaattgtctgttcaagtaaagtgaaatttcctgtccaacttctgcattgtagCCAAATGAAAGCCTGTATGAGCAGAAGCCCGAAGAAACAGCTCCTGTCCTGCCATCATCGGTGATTGCAAGTACTACAGCTAGGAGCAAACCCCATACTT
gtttaat putative branch site (score: 4)
cttctgc putative PPT
tgaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taactctctaattttatttcttcctgctaatctaaaaaaaactttgtttaattgtctgttcaagtaaagtgaaatttcctgtccaacttctgcattgtagCCAAATGAAAGCCTGTATGAGCAGAAGCCCGAAGAAACAGCTCCTGTCCTGCCATCATCGGTGATTGCAAGTACTACAGCTAGGAGCAAACCCCATACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA