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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactgcagaatgcatttttctttgggtgcagtatgtacttgctgcatgctgacgagccttgcctgtttttttcagCAATAGGGCACATTTCACACAGCCAGAAG

Basic information

species Zea mays
transcript GRMZM2G133959_T01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71445213|gb|DR826263.1|DR826263
EST:     CTGTGTCGAGGCGCTCTATGAAAACCTCGGTGGCCAAGCATCTATTACAG                         CAATAGGGCACATTTCACACAGCCAGAAG
genomic: CTGTGTCGAGGCGCTCTATGAAAACCTCGGTGGCCAAGCATCTATTACAGgtaactgcag ... tttttttcagCAATAGGGCACATTTCACACAGCCAGAAG
EST: gi|148930291|gb|EC872790.2|EC872790
EST:     CTGTGTCGAGGCGCTCTATGAAAACCTCGGTGGCCAAGCATCTATTACAG                         CAATAGGGCACATTTCACACAGCCAGAAG
genomic: CTGTGTCGAGGCGCTCTATGAAAACCTCGGTGGCCAAGCATCTATTACAGgtaactgcag ... tttttttcagCAATAGGGCACATTTCACACAGCCAGAAG
EST: gi|148931157|gb|EC873861.2|EC873861
EST:     CTGTGTCGAGGCGCTCTATGAAAACCTCGGTGGCCAAGCATCTATTACAG                         CAATAGGGCACATTTCACACAGCCAGAAA
genomic: CTGTGTCGAGGCGCTCTATGAAAACCTCGGTGGCCAAGCATCTATTACAGgtaactgcag ... tttttttcagCAATAGGGCACATTTCACACAGCCAGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgggtgcagtatgtacttgctgcatgctgacgagccttgcctgtttttttcagCAATAGGGCACATTTCACACAGCCAGAAG
                          tgctgac  putative branch site (score: 2)
                                    ccttgcctgttttttt  putative PPT
                                           tgttttttt  TA-rich tract