Sequence
atgc intronic sequence ATGC exonic sequencegtccgtgaatgctctgaagatttctgcgcgccttacctatagtcatcttctaatgttgcctgatggaaggtatcctttggttccagGTAAGTTCAGACATCTGCCTGTTGTTGAGAATGGTGAAGTCATTGCAATTCTGGACATAGCCAAGTGCCTATATGATGCTATTGCACGGATGGAAAGGGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G133621_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g69900.1 (Oryza sativa), 3'ss of exon 3
gtccgtgaatgctctgaagatttctgcgcgccttacctatagtcatcttctaatgttgcctgatggaaggtatcctttggttccagGTAAGTTCAGACATCTGCCTGTTGTTGAGAATGGTGAAGTCATTGCAATTCTGGACATAGCCAAGTGCCTATATGATGCTATTGCACGGATGGAAAGGGC
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gtgggtgaa-gtcccaaacactatctctggtcccttgtttgcacttctcttgatttt-cctga--gaatgtatcacttcattccagGTAAGTTCAGACATTTACCTGTCGTGGAGAACGGTGAAGTCATTGCACTGCTCGACATAGCCAAGTGCCTGTATGATGCTATTGCGCGAATGGAAAGGGC
upper sequence: GRMZM2G133621_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA05G38140.1 (Glycine max), 3'ss of exon 3
gtccgtgaatgctctgaagatttctgcgcgccttacctatagtcatcttctaatgttgcctga-----tggaaggtatcctttggttccagGTAAGTTCAGACATCTGCCTGTTGTTGAGAATGGTGAAGTCATTGCAATTCTGGACATAGCCAAGTGCCTATATGATGCTATTGCACGGATGGAAAGGGC
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----gttggtattacacggagataggcacatgctaattactatttcggtacggtgccctttgaataaatacaaagatgattatgttttcagGGAGGTTCAGACATTTACCTGTGGTGGAGAATGGAGAAGTAGTTGCCATACTTGACATAGCAAAGTGTTTGTATGATGCCATTGCCCGTATGGAAAGGGC
upper sequence: GRMZM2G133621_T02 (Zea mays), 3'ss of exon 3
lower sequence: Vv17s0000g01200.t01 (Vitis vinifera), 3'ss of exon 4
gtccgtgaatgctctgaagatt---tctgcgcgccttacctatagtcatcttcta-atgttgcctgatggaaggtatcct--ttggttccagGTAAGTTCAGACATCTGCCTGTTGTTGAGAATGGTGAAGTCATTGCAATTCTGGACATAGCCAAGTGCCTATATGATGCTATTGCACGGATGGAAAGGGC
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-gttgctgataacctgaaaaccatgtttactttttccatccaacatgctattctacaacttgccaactgaacactgtgctgattttttgcagGAAAGTTCAGACATTTGCCTGTTGTAGAGAATGGGGAGGTCATTGCTTTACTAGACATAGCAAAGTGTTTATATGATGCTATTGCTCGAATGGAGAGGGCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211454144|gb|FL044270.1|FL044270EST: TGTTCTCGCGGACACGCTTGCCGTTGAGGCGTTGCAAAAGATGGTGCAAG GGTA-GTTCAGACATCTGCCTGTTGNTGAGAATGGTGAAGTCATTGCAATT
genomic: TGTTCTCGCGGACACGCTTGCCGTTGAGGCGTTGCAAAAGATGGTGCAAGgtccgtgaat ... ttggttccagG-TAAGTTCAGACATCTGCCTGTTGTTGAGAATGGTGAAGTCATTGCAATT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttacctatagtcatcttctaatgttgcctgatggaaggtatcctttggttccagGTAAGTTCAGACATCTGCCTGTTGTTGAGAATGGTGAAGTCATTGCAATTCTGGACATAGCCAAGTGCCTATATGATGCTATTGCACGGATGGAAAGGGC
tatccttt CT-rich tract
ttctaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtccgtgaatgctctgaagatttctgcgcgccttacctatagtcatcttctaatgttgcctgatggaaggtatcctttggttccagGTAAGTTCAGACATCTGCCTGTTGTTGAGAATGGTGAAGTCATTGCAATTCTGGACATAGCCAAGTGCCTATATGATGCTATTGCACGGATGGAAAGGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA