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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttcactgactgagaatgagatacggttcgttctccgccgcggcttcttcactttgagcgtgaatgacatggaggctctctctggcgtctttttgtctgcagCATGGAGGAGGAGTAGCGGCCCCGTTTGGCATGGCGCCGCTGGGAGTGGCGGCGGCGGACGAAGCCCGGTTCTGCATGACGCCGTGGTCAGCGGCGGCGC

Basic information

species Zea mays
transcript GRMZM2G133331_T01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89764378|gb|DY691211.1|DY691211
EST:     GCTCCAAGTCCTCCAGCGCCGCCACCTTCGTGCCGCCGCTCGCCGCCGCG                         CATGGAGGAGGAGTAGCGGCCCCGTTTGGCATGGCGCCGCTGGGAGTGGCG
genomic: GCTCCAAGTCCTCCAGCGCCGCCACCTTCGTGCCGCCGCTCGCCGCCGCGgtgagttcac ... ttgtctgcagCATGGAGGAGGAGTAGCGGCCCCGTTTGGCATGGCGCCGCTGGGAGTGGCG
EST: gi|101391801|gb|EB817829.1|EB817829
EST:     GCTCCAAGTCCTCCAGCGCCGCCACCTTCGTGCCGCCGCTCGCCGCCGCG                         CATGGAGGAGGAGTAGCGGCCCCGTTTGGCATGGCGCCGCTGGGAGTGGCG
genomic: GCTCCAAGTCCTCCAGCGCCGCCACCTTCGTGCCGCCGCTCGCCGCCGCGgtgagttcac ... ttgtctgcagCATGGAGGAGGAGTAGCGGCCCCGTTTGGCATGGCGCCGCTGGGAGTGGCG
EST: gi|71448696|gb|DR829746.1|DR829746
EST:     GCTCCAAGTCCTCCAGCGCCGCCACCTTCGTGCCGCCGCTCGCCGCCGCG                         CATGGAGGAGGAGTAGCGGCCCCGTTTGGCATGGCGCCGCTGGGAGTGGCG
genomic: GCTCCAAGTCCTCCAGCGCCGCCACCTTCGTGCCGCCGCTCGCCGCCGCGgtgagttcac ... ttgtctgcagCATGGAGGAGGAGTAGCGGCCCCGTTTGGCATGGCGCCGCTGGGAGTGGCG
EST: gi|76931345|gb|DV172707.1|DV172707
EST:     GCTCCAAGTCCTCCAGCGCCGCCACCTTCGTGCCGCCGCTCGCCGCCGCG                         CATGGAGGAGGAGTAGCGGCCCCGTTTGGCATGGCGCCGCTGGGAGTGGCG
genomic: GCTCCAAGTCCTCCAGCGCCGCCACCTTCGTGCCGCCGCTCGCCGCCGCGgtgagttcac ... ttgtctgcagCATGGAGGAGGAGTAGCGGCCCCGTTTGGCATGGCGCCGCTGGGAGTGGCG
EST: gi|74237892|gb|DT645806.1|DT645806
EST:     GCTCCAAGTCCTCCAGCGCCGCCACCTTCGTGCCGCCGCTCGCCGCCGCG                         CATGGAGGAGGAGTAGCGGCCCCGTTTGGCATGGCGCCGCTGGGAGTGGCG
genomic: GCTCCAAGTCCTCCAGCGCCGCCACCTTCGTGCCGCCGCTCGCCGCCGCGgtgagttcac ... ttgtctgcagCATGGAGGAGGAGTAGCGGCCCCGTTTGGCATGGCGCCGCTGGGAGTGGCG
EST: gi|93017001|gb|EB642521.1|EB642521
EST:     GCTCCAAGTCCTCCAGCGCCGCCACCTTCGTGCCGCCGCTCGCCGCCGCG                         CATGGAGGAGGAGTAGCGGCCCCGTTTGGCATGGCGCCGCTGGGAGTGGCG
genomic: GCTCCAAGTCCTCCAGCGCCGCCACCTTCGTGCCGCCGCTCGCCGCCGCGgtgagttcac ... ttgtctgcagCATGGAGGAGGAGTAGCGGCCCCGTTTGGCATGGCGCCGCTGGGAGTGGCG
EST: gi|71311268|gb|DR791947.1|DR791947
EST:     GCTCCAAGTCCTCCAGCGCCGCCACCTTCGTGCCGCCGCTCGCCGCCGCG                         CATGGAGGAGGAGTAGCGGCCCCGTTTGGCATGGCGCCGCTGGGAGTGGCG
genomic: GCTCCAAGTCCTCCAGCGCCGCCACCTTCGTGCCGCCGCTCGCCGCCGCGgtgagttcac ... ttgtctgcagCATGGAGGAGGAGTAGCGGCCCCGTTTGGCATGGCGCCGCTGGGAGTGGCG
EST: gi|71773720|gb|DR971616.1|DR971616
EST:     GCTCCAAGTCCTCCAGCGCCGCCACCTTCGTGCCGCCGCTCGCCGCCGCG                         CATGGAGGAGGAGTAGCGGCCCCGTTTGGCATGGCGCCGCTGGGAGTGGCG
genomic: GCTCCAAGTCCTCCAGCGCCGCCACCTTCGTGCCGCCGCTCGCCGCCGCGgtgagttcac ... ttgtctgcagCATGGAGGAGGAGTAGCGGCCCCGTTTGGCATGGCGCCGCTGGGAGTGGCG
EST: gi|76923172|gb|DV169368.1|DV169368
EST:     GCTCCAAGTCCTCCAGCGCCGCCACCTTCGTGCCGCCGCTCGCCGCCGCG                         CATGGAGGAGGAGTAGCGGCCCCGTTTGGCATGGCGCCGCTGGGAGTGGCG
genomic: GCTCCAAGTCCTCCAGCGCCGCCACCTTCGTGCCGCCGCTCGCCGCCGCGgtgagttcac ... ttgtctgcagCATGGAGGAGGAGTAGCGGCCCCGTTTGGCATGGCGCCGCTGGGAGTGGCG
EST: gi|71330993|gb|DR802318.1|DR802318
EST:     GCTCCAAGTCCTCCAGCGCCGCCACCTTCGTGCCGCCGCTCGCCGCCGCG                         CATGGAGGAGGAGTAGCGGCCCCGTTTGGCATGGCGCCGCTGGGAGTGGCG
genomic: GCTCCAAGTCCTCCAGCGCCGCCACCTTCGTGCCGCCGCTCGCCGCCGCGgtgagttcac ... ttgtctgcagCATGGAGGAGGAGTAGCGGCCCCGTTTGGCATGGCGCCGCTGGGAGTGGCG
EST: gi|50329600|gb|CO524726.1|CO524726
EST:     GCTCCAAGTCCTCCAGCGCCGCCACCTTCGTGCCGCCGCTCGCCGCCGCG                         CATGGAGGAGGAGTAGCGGCCCCGTTTGGCATGGCGCCGCTGGGAGTGGCG
genomic: GCTCCAAGTCCTCCAGCGCCGCCACCTTCGTGCCGCCGCTCGCCGCCGCGgtgagttcac ... ttgtctgcagCATGGAGGAGGAGTAGCGGCCCCGTTTGGCATGGCGCCGCTGGGAGTGGCG
EST: gi|91868422|gb|EB400029.1|EB400029
EST:     GCTCCAAGTCCTCCAGCGCCGCCACCTTCGTGCCGCCGCTCGCCGCCGCG                         CATGGAGGAGGAGTAGCGGCCCCGTTTGGCATGGCGCCGCTGGGAGTGGCG
genomic: GCTCCAAGTCCTCCAGCGCCGCCACCTTCGTGCCGCCGCTCGCCGCCGCGgtgagttcac ... ttgtctgcagCATGGAGGAGGAGTAGCGGCCCCGTTTGGCATGGCGCCGCTGGGAGTGGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcactttgagcgtgaatgacatggaggctctctctggcgtctttttgtctgcagCATGGAGGAGGAGTAGCGGCCCCGTTTGGCATGGCGCCGCTGGGAGTGGCGGCGGCGGACGAAGCCCGGTTCTGCATGACGCCGTGGTCAGCGGCGGCGC
                                        tctttttgtct  CT-rich tract
                                        tcttttt  TA-rich tract