1 5' 3' | 2 5' 3' | 3 5' 3' |
...tcgattctcttcttcattattgccttccttagaaagttacttgggtaaatatcatgcttcctattctaatattactgttctgcaatctgcacttccgcagTTCATGGACAAGTCGTGCAGTGTTATGGACTCATCTATGGCTAACAAGTAGGCACATGGCACATCAGTTCCGACCAATACGGCTATTGTTGTATCCATCT
species | Zea mays |
transcript | GRMZM2G132978_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAAGTTCCTAGAGCCATTTGGACGGGAGTTACATTCAATGAAAAAA TTCATGGACAAGTCGTGCAGTGTTATGGACTCATCTATGGCTAACAAGTAGEST: gi|116819289|gb|EC862392.1|EC862392
genomic: GAAGTTCCTAGAGCCATTTGGACGGGAGTTACATTCAATGAAAAAAgtgagtcttt ... acttccgcagTTCATGGACAAGTCGTGCAGTGTTATGGACTCATCTATGGCTAACAAGTAG
EST: CTAGAG-CATTTGGACGGGAGTTACATTCAATGAAAAAA -TCA-GGACAAGTCGTGCAGTGTTATGGACTCATCTATGGCTAACAAGTAGEST: gi|116818165|gb|EC861147.1|EC861147
genomic: CTAGAGCCATTTGGACGGGAGTTACATTCAATGAAAAAAgtgagtcttt ... acttccgcagTTCATGGACAAGTCGTGCAGTGTTATGGACTCATCTATGGCTAACAAGTAG
EST: CATTTGGACGGGAGTTACATTCAATGAAAAAA -TCATGGAC-AGTCGTGCAGTGTTATGGACTCATCTATGGCTAACAAGTAGEST: gi|60356091|gb|DN223064.1|DN223064
genomic: CATTTGGACGGGAGTTACATTCAATGAAAAAAgtgagtcttt ... acttccgcagTTCATGGACAAGTCGTGCAGTGTTATGGACTCATCTATGGCTAACAAGTAG
EST: ATATGAAGTTCCTAGAGCCATTTGGACGGGAGTTACATTCAATGAAAAAA TTCATGGACAAGTCGTGCAGTGTTATGGACTCATCTATGGCTAACAAGTAG
genomic: ATATGAAGTTCCTAGAGCCATTTGGACGGGAGTTACATTCAATGAAAAAAgtgagtcttt ... acttccgcagTTCATGGACAAGTCGTGCAGTGTTATGGACTCATCTATGGCTAACAAGTAG
taaatatcatgcttcctattctaatattactgttctgcaatctgcacttccgcagTTCATGGACAAGTCGTGCAGTGTTATGGACTCATCTATGGCTAACAAGTAGGCACATGGCACATCAGTTCCGACCAATACGGCTATTGTTGTATCCATCT
ttctaat putative branch site (score: 267)
cacttcc putative PPT
tattctaatattact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcgattctcttcttcattattgccttccttagaaagttacttgggtaaatatcatgcttcctattctaatattactgttctgcaatctgcacttccgcagTTCATGGACAAGTCGTGCAGTGTTATGGACTCATCTATGGCTAACAAGTAGGCACATGGCACATCAGTTCCGACCAATACGGCTATTGTTGTATCCATCT
- - - - - - - - - - tgccttc
- - - - - - - - - - - - - - - - - - ttacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttctgc