1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ctgtttgaatatccacaactgcttgcacccatgaatctcaagtacatggataccatttcactccattattgtaactgctcttcctacttgatttcttcagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTCCTCTTGTCATTGTTGGGCTCGTGGCATATGTGAAGACTCCTCGTGGCCT
species | Zea mays |
transcript | GRMZM2G132968_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCA AACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTCEST: gi|211506312|gb|FL378322.1|FL378322
genomic: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCAgtatgtccac ... atttcttcagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTC
EST: CAAG-CTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCA AACTCCATAAGAAGGAAGCTTGTGAGGCTGTTACCATCATTGAAACCMCTCEST: gi|211319300|gb|FL392936.1|FL392936
genomic: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCAgtatgtccac ... atttcttcagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTC
EST: CAA-GCTGGCATGACTCACATTGTCCGTGA-GTTGAGAAGCCAGGATCCA AACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTCEST: gi|19437109|gb|BM953519.1|BM953519
genomic: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCAgtatgtccac ... atttcttcagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTC
EST: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCA AACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTCEST: gi|211455940|gb|FL376145.1|FL376145
genomic: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCAgtatgtccac ... atttcttcagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTC
EST: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCA AACTCCATAAGAAGGAAACTTGTGAGGCTGTTVCCATCATTGAAACCCCTCEST: gi|67021955|gb|CO450704.1|CO450704
genomic: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCAgtatgtccac ... atttcttcagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTC
EST: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCA AACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTCEST: gi|13126237|gb|BG316807.1|BG316807
genomic: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCAgtatgtccac ... atttcttcagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTC
EST: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCA AACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATEST: gi|211431402|gb|FL392537.1|FL392537
genomic: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCAgtatgtccac ... atttcttcagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCAT
EST: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCA AACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTCEST: gi|211111176|gb|FL402613.1|FL402613
genomic: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCAgtatgtccac ... atttcttcagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTC
EST: CAA-GCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCA AACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTCEST: gi|211294655|gb|FL395554.1|FL395554
genomic: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCAgtatgtccac ... atttcttcagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTC
EST: CAA-GCTGGCATGACTCACATTGTCCGTGA-GTTGAGAAGCCAGGATCCA AACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTCEST: gi|211498695|gb|FL368204.1|FL368204
genomic: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCAgtatgtccac ... atttcttcagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTC
EST: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCA AACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTCEST: gi|211198974|gb|FL379468.1|FL379468
genomic: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCAgtatgtccac ... atttcttcagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTC
EST: CAA-GCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCC- AACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTCEST: gi|211078910|gb|FL369904.1|FL369904
genomic: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCAgtatgtccac ... atttcttcagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTC
EST: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGARAAGCCAGGATCCA AACTCCATTAAGAAGGEST: gi|211144592|gb|FL403029.1|FL403029
genomic: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCAgtatgtccac ... atttcttcagAACTCCAT-AAGAAGG
EST: CAA-GCTGGCATGACTCACATTGTCCGTGA-GTTGAGAAGCCAGGATCCA AACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTCEST: gi|211180164|gb|FL404754.1|FL404754
genomic: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCAgtatgtccac ... atttcttcagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTC
EST: CAA-GCTGGCATGACTCACATTGTCCGTGA-GTTGAGAAGCCAGGATCCA AACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTCEST: gi|20301529|gb|BQ164472.1|BQ164472
genomic: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCAgtatgtccac ... atttcttcagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTC
EST: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCA AACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTCEST: gi|211473687|gb|FL374870.1|FL374870
genomic: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCAgtatgtccac ... atttcttcagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTC
EST: CNAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCA AACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTCEST: gi|211490786|gb|FL398948.1|FL398948
genomic: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCAgtatgtccac ... atttcttcagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTC
EST: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCA AACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTCEST: gi|26557286|gb|CA829521.1|CA829521
genomic: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCAgtatgtccac ... atttcttcagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTC
EST: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCA AACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTC
genomic: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCAgtatgtccac ... atttcttcagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTC
atggataccatttcactccattattgtaactgctcttcctacttgatttcttcagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTCCTCTTGTCATTGTTGGGCTCGTGGCATATGTGAAGACTCCTCGTGGCCT
ctcttcctacttgatt CT-rich tract
attattgtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgtttgaatatccacaactgcttgcacccatgaatctcaagtacatggataccatttcactccattattgtaactgctcttcctacttgatttcttcagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTCCTCTTGTCATTGTTGGGCTCGTGGCATATGTGAAGACTCCTCGTGGCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
ctgtttg
- - - - - - ccacaac
- - - - - - - - - -tgcttgc
- - - - - - - - - - - - - - ccatgaa
- - - - - - - - - - - - - - - - - - - - -gtacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - cactcca