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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcgagagatctatctctgaagcatcactgtgttctatatgtgatgtgatagtatttacatatatataatttttttcaatcgatgctgatgggggggtgacccttgttgctgccaaatgcagATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCGTCGCTCATCTTCAGCGGGTACATCGTCTACGACACAAACAACATCATCA

Basic information

species Zea mays
transcript GRMZM2G132568_T03
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71763444|gb|DR961381.1|DR961381
EST:     CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAG                         ATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
genomic: CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAGgcgagagatc ... ccaaatgcagATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
EST: gi|71757915|gb|DR955852.1|DR955852
EST:     CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAG                         ATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
genomic: CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAGgcgagagatc ... ccaaatgcagATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
EST: gi|30088155|gb|CB886360.1|CB886360
EST:     CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAG                         ATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
genomic: CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAGgcgagagatc ... ccaaatgcagATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
EST: gi|26558874|gb|CA831109.1|CA831109
EST:     CTTTCCTGTTCGCCGCCCTCATAGTGCTGCTTGTGTTCGCACTCATCCAG                         ATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
genomic: CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAGgcgagagatc ... ccaaatgcagATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
EST: gi|87156714|gb|DY401503.1|DY401503
EST:     CTTTCCTGTTCGCCGCCCTCATAGTGCTGCTTGTGTTCGCACTCATCCAG                         ATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
genomic: CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAGgcgagagatc ... ccaaatgcagATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
EST: gi|33098926|gb|CF058886.1|CF058886
EST:     CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAG                         ATCCTGGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGC
genomic: CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAGgcgagagatc ... ccaaatgcagATCCTG-TTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGC
EST: gi|76912855|gb|DV164912.1|DV164912
EST:     CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAG                         ATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATTTACGGCGGGCTGGCG
genomic: CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAGgcgagagatc ... ccaaatgcagATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
EST: gi|91876242|gb|EB406199.1|EB406199
EST:     CATAGTGCTGCTGGTGTTCGCACTCATCCAG                         ATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
genomic: CATAGTGCTGCTTGTGTTCGCACTCATCCAGgcgagagatc ... ccaaatgcagATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
EST: gi|29544931|gb|CB605539.1|CB605539
EST:     CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAG                         ATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
genomic: CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAGgcgagagatc ... ccaaatgcagATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
EST: gi|32850248|gb|CD989929.1|CD989929
EST:     CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAG                         ATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
genomic: CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAGgcgagagatc ... ccaaatgcagATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
EST: gi|91876243|gb|EB406200.1|EB406200
EST:     CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAG                         ATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
genomic: CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAGgcgagagatc ... ccaaatgcagATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
EST: gi|32844216|gb|CD983897.1|CD983897
EST:     CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAG                         ATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATTTACGGCGGGCTGGCG
genomic: CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAGgcgagagatc ... ccaaatgcagATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
EST: gi|78092495|gb|DV520869.1|DV520869
EST:     CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAG                         ATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
genomic: CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAGgcgagagatc ... ccaaatgcagATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
EST: gi|76910470|gb|DV163892.1|DV163892
EST:     CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAG                         ATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
genomic: CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAGgcgagagatc ... ccaaatgcagATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
EST: gi|149059660|gb|EE157003.2|EE157003
EST:     CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAG                         ATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
genomic: CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAGgcgagagatc ... ccaaatgcagATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
EST: gi|78077463|gb|DV505897.1|DV505897
EST:     CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAG                         ATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATTTACGGCGGGCGGGCG
genomic: CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAGgcgagagatc ... ccaaatgcagATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
EST: gi|45847907|gb|CN071850.1|CN071850
EST:     CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAG                         ATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
genomic: CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAGgcgagagatc ... ccaaatgcagATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
EST: gi|211530941|gb|FL194454.1|FL194454
EST:     CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAG                         ATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
genomic: CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAGgcgagagatc ... ccaaatgcagATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
EST: gi|78106649|gb|DV525067.1|DV525067
EST:     CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAG                         ATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
genomic: CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAGgcgagagatc ... ccaaatgcagATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
EST: gi|134769119|gb|DY742723.1|DY742723
EST:     CTTTCCTGTTCGCCGCCCTCATAGTGCTGCTTGTGTTCGCACTCATCCAG                         ATCCTGTTCCCACTGGGCAAACTCTCCCAGATGATCTACGGCGGGCTGGCG
genomic: CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAGgcgagagatc ... ccaaatgcagATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
EST: gi|89250848|gb|DY622634.1|DY622634
EST:     CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAG                         ATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
genomic: CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAGgcgagagatc ... ccaaatgcagATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
EST: gi|78112127|gb|DV530523.1|DV530523
EST:     CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAG                         ATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
genomic: CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAGgcgagagatc ... ccaaatgcagATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
EST: gi|30031558|gb|CB833409.1|CB833409
EST:     CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAG                         ATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
genomic: CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAGgcgagagatc ... ccaaatgcagATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
EST: gi|32850305|gb|CD989986.1|CD989986
EST:     CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAG                         ATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
genomic: CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAGgcgagagatc ... ccaaatgcagATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
EST: gi|149059659|gb|EE157002.2|EE157002
EST:     CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAG                         ATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATTTACGGCGGGCGGGCG
genomic: CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAGgcgagagatc ... ccaaatgcagATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
EST: gi|78112126|gb|DV530522.1|DV530522
EST:     CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAG                         ATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
genomic: CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAGgcgagagatc ... ccaaatgcagATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
EST: gi|32844814|gb|CD984495.1|CD984495
EST:     CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAG                         ATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATTTACGGCGGGCTGGCG
genomic: CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAGgcgagagatc ... ccaaatgcagATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
EST: gi|74245688|gb|DT653602.1|DT653602
EST:     CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAG                         ATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCGGGCG
genomic: CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAGgcgagagatc ... ccaaatgcagATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
EST: gi|71419161|gb|DR804672.1|DR804672
EST:     CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAG                         ATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
genomic: CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAGgcgagagatc ... ccaaatgcagATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
EST: gi|89250538|gb|DY622324.1|DY622324
EST:     CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAG                         ATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
genomic: CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAGgcgagagatc ... ccaaatgcagATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
EST: gi|78106648|gb|DV525066.1|DV525066
EST:     CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAG                         ATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
genomic: CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAGgcgagagatc ... ccaaatgcagATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
EST: gi|50322759|gb|CO517885.1|CO517885
EST:     CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAG                         ATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATTTACGGCGGGCTGGCG
genomic: CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAGgcgagagatc ... ccaaatgcagATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
EST: gi|76011228|gb|DT938398.1|DT938398
EST:     CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAG                         ATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
genomic: CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAGgcgagagatc ... ccaaatgcagATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
EST: gi|71419160|gb|DR804671.1|DR804671
EST:     CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAG                         ATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATTTACGGCGGGCTGGCG
genomic: CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAGgcgagagatc ... ccaaatgcagATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
EST: gi|76919250|gb|DV167633.1|DV167633
EST:     CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAG                         ATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG
genomic: CTTTCCTGTTCGCCGCCATCATAGTGCTGCTTGTGTTCGCACTCATCCAGgcgagagatc ... ccaaatgcagATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttttttcaatcgatgctgatgggggggtgacccttgttgctgccaaatgcagATCCTGTTCCCACTGGGCAAGCTCTCCCAGATGATCTACGGCGGGCTGGCGTCGCTCATCTTCAGCGGGTACATCGTCTACGACACAAACAACATCATCA
                tgctgat  putative branch site (score: 3)
     ttttcaat  TA-rich tract