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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagggaggcttctcttttcccgccgcaaacgatggacgtactggcggccgcagacctgcttggcggcgcgcgctaacccggccggcctgtgacatgacgtgactgactgcctgccccgcagATCGTTGTTCACAAGACCAGCGCCAGGGGCACCCACTTCCGGCGCGCCGGGCCACGGCAGCGGGTGTACTTCCAGCCCGACGAGGTGAACGCCGCCATCG

Basic information

species Zea mays
transcript GRMZM2G132069_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G132069_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g09570.1 (Oryza sativa), 3'ss of exon 3
gtgagggaggcttc-tcttttcccgccgcaaacgatggacgtactggcggccgcagacctgcttggcggcgcgcgctaacccggccggcctgtgacatgacgtgactgactgcctgccccgcagATCGTTGTTCACAAGACCAGCGCCAGGGGCACCCACTTCCGGCGCGCCGGGCCACGGCAGCGGGTGTACTTCCAGCCCGACGAGGTGAACGCCGCCATCG
    | |||||||| ||||| |  | || ||| |||    ||| |  |||   |||             |      | ||   ||   | |   |  |   |    |  |||| |||  |  ||||||||||||| |||||||| || ||||||||||| |||||||| |||||||| ||||||||||||||||||||| |||| ||||| ||||| ||||| |
----gtgaggcttcatctttccatgacgaaaa-gattactgtaatt-cggttacagggtgat-------catagtttgactgagctaactta--attttgtggtgtttgctgcttgcttc--agATCGTTGTTCATAAGACCAGTGCTAGGGGCACCCATTTCCGGCGAGCCGGGCCGCGGCAGCGGGTGTACTTCCAGTCCGATGAGGTCAACGCGGCCATTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgcgcgctaacccggccggcctgtgacatgacgtgactgactgcctgccccgcagATCGTTGTTCACAAGACCAGCGCCAGGGGCACCCACTTCCGGCGCGCCGGGCCACGGCAGCGGGTGTACTTCCAGCCCGACGAGGTGAACGCCGCCATCG
                                  gactgac  putative branch site (score: 2)
                                           cctgcccc  putative PPT