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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtatcttttgcagataaatttggtgttgtttggttagtcactttgcgggaagatagtgcagagcaggtttcagttgataacaaacctgtgtcaattcttggtcactattgcagTATCATCACTAGCATG

Basic information

species Zea mays
transcript GRMZM2G131998_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G131998_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os03g53530.1 (Oryza sativa), 3'ss of exon 2
-------------------------------------------gtatgta-tcttttgcagataaatttggtgttgtttg----gttagtcactttgcgg-------gaagatagtg-cagagcaggtttcagt-----tgataacaaacctgtgtcaattcttggtcactattgcagTATCA---TCACTAGCATG---
                                           ||||  | || ||     || | |||| | |  ||||    ||   |   ||||| |       ||| | || | ||| |||| |   | |     ||||  || |  |||  |  ||   | | | | | |   |||     |   || ||||   
tattgttagttatgttaaaaacttcatttttgtggttggtaatgtattaagtccttcatgcatgagtttgatttcttttgcaatgtctttacttttgcagAACTTCTGAAAAGAGGGTCAGTGCAGTTGCTATTAGCAATGATGGCACATATGTAACTTTTGCAGATAAATTTGGTGTTATTTGGTTAGTTACCATGGGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211048672|gb|FL294333.1|FL294333
EST:     AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCT                         TATCATCACTAGCATG
genomic: AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTgtatgtatct ... actattgcagTATCATCACTAGCATG
EST: gi|211051626|gb|FL294345.1|FL294345
EST:     AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCT                         TATCATCACTAGCATG
genomic: AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTgtatgtatct ... actattgcagTATCATCACTAGCATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagagcaggtttcagttgataacaaacctgtgtcaattcttggtcactattgcagTATCATCACTAGCATG
                tgataac  putative branch site (score: 2)
                  ataacaaa  TA-rich tract