1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgagtgctctcgtgcatccgtcggttctttgcctacctattgactcgaaagtgaagaacaacgttcatgatgccatgcatgctggtgaccttcgtgcagCTACAAGATGTTCCACAGGTAGCACTCGAGCCAGAGAGGAGTACGGATCAGGAAACGAGCAGGCCGCCAGAGAGG
species | Zea mays |
transcript | GRMZM2G131961_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCAGCGCGTCCACCGTCATGGAGGCGGACACCAAGCTCGAGACAAGCAGG CTACAAGATGTTCCACAGGTAGCACTCGAGCCAGAGAGGAGTACGGATCAGEST: gi|211079216|gb|FL043558.1|FL043558
genomic: GCAGCGCGTCCACCGTCATGGAGGCGGACACCAAGCTCGAGACAAGCAGGgtgagtgctc ... cttcgtgcagCTACAAGATGTTCCACAGGTAGCACTCGAGCCAGAGAGGAGTACGGATCAG
EST: GCAGCGCGTCCACCGTCATGGAGGCGGACACCAAGCTCGAGACAAGCAGG CTACAAGATGTTCCACAGGTAGCACTCGAGCCAGAGAGGAGTACGGATCAGEST: gi|149089928|gb|EE179215.2|EE179215
genomic: GCAGCGCGTCCACCGTCATGGAGGCGGACACCAAGCTCGAGACAAGCAGGgtgagtgctc ... cttcgtgcagCTACAAGATGTTCCACAGGTAGCACTCGAGCCAGAGAGGAGTACGGATCAG
EST: GCAGCGCGTCCACCGTCATGGAGGCGGACACCAAGCTCGAGACAAGCAGG CTACAAGATGTTCCACAGGTAGCACTCGAGCCAGAGAGGAGTACGGATCAGEST: gi|148948317|gb|EC893834.2|EC893834
genomic: GCAGCGCGTCCACCGTCATGGAGGCGGACACCAAGCTCGAGACAAGCAGGgtgagtgctc ... cttcgtgcagCTACAAGATGTTCCACAGGTAGCACTCGAGCCAGAGAGGAGTACGGATCAG
EST: GCAGCGCGTCCACCGTCATGGAGGCGGACACCAAGCTCGAGACAAGCAGG CTACAAGATGTTCCACAGGTAGCACTCGAGCCAGAGAGGAGTACGGATCAGEST: gi|211107199|gb|FL022831.1|FL022831
genomic: GCAGCGCGTCCACCGTCATGGAGGCGGACACCAAGCTCGAGACAAGCAGGgtgagtgctc ... cttcgtgcagCTACAAGATGTTCCACAGGTAGCACTCGAGCCAGAGAGGAGTACGGATCAG
EST: GCAGCGCGTCCACCGTCATGGAGGCGGACACCAAGCTCGAGACAAGCAGG CTACAAGATGTTCCACAGGTAGCACTCGAGCCAGAGAGGAGTACGGATCAG
genomic: GCAGCGCGTCCACCGTCATGGAGGCGGACACCAAGCTCGAGACAAGCAGGgtgagtgctc ... cttcgtgcagCTACAAGATGTTCCACAGGTAGCACTCGAGCCAGAGAGGAGTACGGATCAG
tcgaaagtgaagaacaacgttcatgatgccatgcatgctggtgaccttcgtgcagCTACAAGATGTTCCACAGGTAGCACTCGAGCCAGAGAGGAGTACGGATCAGGAAACGAGCAGGCCGCCAGAGAGG
ccttcgt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgctctcgtgcatccgtcggttctttgcctacctattgactcgaaagtgaagaacaacgttcatgatgccatgcatgctggtgaccttcgtgcagCTACAAGATGTTCCACAGGTAGCACTCGAGCCAGAGAGGAGTACGGATCAGGAAACGAGCAGGCCGCCAGAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG