Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caatggccagcacatgcacatgttgtcgactcgactgcatcgttaaacaatgggagaacgtcagtacgtcactgagcagctagacggcctctgtttgcagCACGCGGTGGGGTACGTGACCGGCGGGCAGTTCTACGGCGCCAAGGCGAGCCTGAACGTGTGGCCGGCGCAGGTGGCGTCGCCGGCGGAGTTCAGCCTCT

Basic information

species Zea mays
transcript GRMZM2G131650_T04
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G131650_T04 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os05g07764.1 (Oryza sativa), 3'ss of exon 3
caatggccagcacatgcacatgttgtcgactcgactgcatcgttaaacaatgggagaacgtcagtacgtcactgagcagctagacggcctctgtttgcagCACGCGGTGGGGTACGTGACCGGCGGGCAGTTCTACGGCGCCAAGGCGAGCCTGAACGTGTGGCCGGCGCAGGTGGCGTCGCCGGCGGAGTTCAGCCTCT
   |||     |     |    |   |||   ||      | ||||       | |    |    || |   ||||||     |     |   | ||||||| |||||||||||| ||| ||| ||||| |||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
ttttggttgataagcatagggataagcgaaaagatgagggctttaatttggttgcgttgatactgacattggtgagcaaaacaaatttatgcatatgcagCATGCGGTGGGGTACATGAGCGGGGGGCAATTCTACGGGGCGAAGGCGAGCCTGAACGTGTGGCCGGCGAAGGTGGCGTCGCCGGCGGAGTTCAGCCTCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50335685|gb|CO530811.1|CO530811
EST:     GTGCGGGGCTCGGGTTCGCGCGGCGCGACTCCACCGGCGGCGGCCACGAG                         CACGCGGTGGGGTACGTGACCGGCGGGCAGTTCTACGGCGCCAAGGCGAGC
genomic: GTGCGGGGCTCGGGTTCGCGCGGCGCGACTCCACCGGCGGCGGCCACGAGgtcagtgcca ... ctgtttgcagCACGCGGTGGGGTACGTGACCGGCGGGCAGTTCTACGGCGCCAAGGCGAGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacaatgggagaacgtcagtacgtcactgagcagctagacggcctctgtttgcagCACGCGGTGGGGTACGTGACCGGCGGGCAGTTCTACGGCGCCAAGGCGAGCCTGAACGTGTGGCCGGCGCAGGTGGCGTCGCCGGCGGAGTTCAGCCTCT
                                          cctctgttt  CT-rich tract