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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgctatttcatattcatttgcttttgatatatcatttgtaaccatgtgttttttgtaagttcaatattttttatatactacaatactcctgtactgcagCTTAAGAGCGCATTTCCCAGAAAAGATGCCCCGTCGGCTCCTCCGAAGCATGCTTTCTTAAGAATAAATTCAAGCAGGTTGCTTCTAGAAGAG

Basic information

species Zea mays
transcript GRMZM2G131070_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G131070_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os06g43560.1 (Oryza sativa), 3'ss of exon 3
-atgctatttcatattcatttgcttttgatatatcatttgtaaccatgtgttttttgtaagttcaatat--tttttatatactacaatactcctgtactgcagCTTAAGAGCGCATTTCCCAGAAAAGATGCCCCGTCGGCTCCTCCGAAGCATGCTTTCTTAAGAATAAATTCAAGCAGGTTGCTTCTAGAAGAG
  |  | ||  ||||   | ||      | | || |||  |  ||||  |   | |   | | ||||||  ||| |  || |||  || |||| |||||||||||||||   | ||||||||||||||    |||  | ||||| ||||||||||| || | ||||||||||||||||||| ||||||||||||||
tctcatcttggatatgattctgagaaaaaaagattattactttccattcgacctct---aatccaatatcatttcttcattctaagattctcccgtactgcagCTTAAGCAGGAATTTCCCAGAAAAGGAATCCCCCCTGCTCCACCGAAGCATGCCTTTTCAAGAATAAATTCAAGCAGGGTGCTTCTAGAAGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211302445|gb|FL244051.1|FL244051
EST:     GCCATGGAATTCTCAGAAGGTTTAGTGACTTTCTGAATCTATCTTCTGAT                         CTTAAGAGCGCATTTCCCAGAAAAGATGTCCCGTCGGCTCCTCCGAAGCAT
genomic: GCCATGGAATTCTCAGAAGGTTTAGTGACTTTCTGAATCTATCTTCTGATgtaagttgag ... tgtactgcagCTTAAGAGCGCATTTCCCAGAAAAGATGCCCCGTCGGCTCCTCCGAAGCAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgttttttgtaagttcaatattttttatatactacaatactcctgtactgcagCTTAAGAGCGCATTTCCCAGAAAAGATGCCCCGTCGGCTCCTCCGAAGCATGCTTTCTTAAGAATAAATTCAAGCAGGTTGCTTCTAGAAGAG
                                       tactcct  CT-rich tract
     tttttgtaagttcaat  TA-rich tract