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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcatgttggatttaatccttttattgatgttgatattagattgatgtaatgttctgttccacttagtcttataataagactgctttcatgtagTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCGTGGCGCTGAATTCGAAGGGGCTGTCATTGCACTGTTCCATCTGTTGATT

Basic information

species Zea mays
transcript GRMZM2G130987_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G130987_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os03g11440.1 (Oryza sativa), 3'ss of exon 3
gtaagcatgttggatttaatccttttattgatgttgatattagattgatgtaatgttctgttccacttagtcttataataagactgctttcatgtagTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCGTGGCGCTGAATTCGAAGGGGCTGTCATTGCACTGTTCCATCTGTTGATT
|| ||||  ||| | ||  | ||| |  |  |||||| |||              |||| ||| ||||    |    ||   | |  ||   ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| ||||| ||||||||||||||| |||||||||||||||||
gtgagcacattgaactttgttcttct-ctattgttgacatt--------------ttctattcaacttgactt----atggaaatctttctctgtagTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACTATCAACAGTGGCCGTGGTGCTGAGTTCGAGGGGGCTGTCATTGCATTGTTCCATCTGTTGATT

upper sequence: GRMZM2G130987_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA13G34370.1 (Glycine max), 3'ss of exon 3
-------------------------------gtaagcatgttggatttaatccttttattgatgt-tgatattagattgatgtaatgttctgt--tccacttagtcttataataagactgctttcatgt-----agTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCGTGGCGCTGAATTCGAAGGGGCTGTCATTGCACTGTTCCATCTGTTGATT
                                  ||| | ||   | ||||  | || |||   | |   |   | |       || ||      |  |  || |  |  |||   | | | ||   ||     ||||| || || || |||||||||||||| || || ||||| |||||||| ||||| |||||||| ||||| ||||| ||||| ||||||||| ||||||| 
gtaaatttctacttttccctgatgagatatttccagc-ttttaattataatgttcttgttgtcttctagcaactgctaaccaggatatttaaccatttatctaatacttaaatggaattcccttttcgtttttcagTGAAAACATTATATGGAAGGCATTTAGTCCAACCACCATTAACAGTGGGCGTGGAGCTGAATTTGAAGGTGCTGTTATTGCTCTGTTCCATTTGTTGATA

upper sequence: GRMZM2G130987_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA12G17950.1 (Glycine max), 3'ss of exon 3
------------gtaagcatgttggatttaatccttttattgatgttga----tattagattgatgtaatgttctgttccacttagtcttataa-----taagactgctttcat------gtagTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCGTGGCGCTGAATTCGAAGGGGCTGTCATTGCACTGTTCCATCTGTTGATT
            || |  |  ||  | || || |  | |||||  |||      ||   |   ||  ||    ||||      |  | | | ||     || || | || ||||      | ||||| || ||||| ||||| |||||||||||||| ||||| |||||||| ||||| |||||||| || || ||||||||||| || |||||| ||||||| 
gtaagttttcttgttaataacttacaatttattccatcattgagcttgtgtctcatagaaactattgaacaaactgtatggtcttttatcaaaaacttgtatgaattctctcattatgttgcagTGAAAACATCATATGGAAAGCATTTAGCCCCACCACCATTAACAGTGGACGTGGAGCTGAATTTGAGGGTGCTGTCATTGCTCTATTCCATTTGTTGATA

upper sequence: GRMZM2G130987_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA12G35990.1 (Glycine max), 3'ss of exon 3
--------------------------gtaagcatgttggatttaatccttttattgatgt-tgatattagattgatgtaatgtt---ctgttccacttagtcttataataagactgctt-tcatgt---agTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCGTGGCGCTGAATTCGAAGGGGCTGTCATTGCACTGTTCCATCTGTTGATT
                              || |||    | ||||  | || |||   | |   |   | |      ||||||   |  ||   |  |  |||| ||  |     ||| |||| |   ||||| || || || |||||||||||||| ||||| || || |||||||| ||||| |||||||| ||||| ||||| ||||| ||||||||| || |||| 
gtaaatttctaccctaacgatatatttcctgcttgtaatctataatgttcttgttgtcttctagcaactgctaaccagaatgtttaaccatttatcaaatacttaaaaggaattcccttgtcatttttcagTGAAAACATTATATGGAAGGCATTTAGTCCCACCACTATTAACAGTGGACGTGGAGCTGAATTTGAAGGTGCTGTTATTGCTCTGTTCCATTTGCTGATA

upper sequence: GRMZM2G130987_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA06G32680.1 (Glycine max), 3'ss of exon 3
-----------------------------gtaagc-atgttggatttaatccttttattgatgttga-tattagattgatgtaatgttctgttccacttagtcttataataagactgctttcat-gtagTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCGTGGCGCTGAATTCGAAGGGGCTGTCATTGCACTGTTCCATCTGTTGATT
                              |||   ||    |  |  | | | |   | ||    | ||||||     ||||  ||  | |   |   | |  ||| |     ||| || ||| | ||||| || ||||| ||||| |||||||| ||||| ||||| |||||||| ||||| |||||||| ||||| ||||||||||| || |||||| ||||||| 
gtaagttttattgtcccttaatttattgtataatttattccagcatcgagcttgtgtctcatagcaactattagcaaagtgtatggtcttttataaaaaacttatatgaattctctgattacattgcagTGAAAACATCATATGGAAAGCATTTAGTCCCACCACCATTAACAGTGGACGTGGAGCTGAATTTGAAGGTGCTGTCATTGCTCTATTCCATTTGTTGATA

upper sequence: GRMZM2G130987_T02 (Zea mays), 3'ss of exon 3
lower sequence: AT1G78720.1 (Arabidopsis thaliana), 3'ss of exon 2
gtaagcatgttggatttaatccttttattgatgttgatattagattgatgtaatgttctgttccacttagtcttataataagactgctttcatgtagTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCGTGGCGCTGAATTCGAAGGGGCTGTCATTGCACTGTTCCATCTGTTGATT
        ||  | |||||    |  |   | ||  |  ||     | |  |  ||| ||  |   | ||   | ||||     | ||||  | |||||| |  || || ||||| ||||| || || ||||||||||||||||| ||||| ||| |||| ||||| ||||| ||||| || ||||| ||  | |||
--------gtgagttttaagtactcca---acgtctagctttctcggttaaaccgttatgcgcatttcagatgt-taatggagtttcttttct-tagTGAAAGCATTATATGGAAAGCATTCAGTCCTACAACCATCAACAGTGGGCGTGGAGCTCAATTTGAAGGAGCTGTTATTGCTCTTTTCCACCTTCTCATT

upper sequence: GRMZM2G130987_T02 (Zea mays), 3'ss of exon 3
lower sequence: Vv19s0014g01020.t01 (Vitis vinifera), 3'ss of exon 3
-------------------------------------------------------------------------gtaagcatgttggatttaatccttttattgatgttgatattagattgatgtaatgttctgttccacttagtcttataataa-gactgctttcat------gtagTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCGTGGCGCTGAATTCGAAGGGGCTGTCATTGCACTGTTCCATCTGTTGATT
                                                                          | |  || | | |   |  | | |  |  |||| |         ||   | |   |    || |||  |||  ||| | |  | || ||| ||      | ||||| || |||||||||||||| ||||||||||| || || || || |||||||| |||||||| ||||| || || ||||| || ||||||||| | || 
gtgagcatctggttctttttctgggattttttttattaatttatcattttgaacatggaatatttgaagaagctttactatctagcagccag-cgtctggtgaatgtggtctcatttctgggttgaccattaactctact--gtcaaatagtgacaattgttttgatcaattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGCGGTCGTGGAGCTGAATTTGAAGGTGCCGTTATTGCTCTCTTCCATCTGCTAATA

upper sequence: GRMZM2G130987_T02 (Zea mays), 3'ss of exon 3
lower sequence: Vv00s2574g00010.t01 (Vitis vinifera), 3'ss of exon 2
--------------------------------------------------------------------------gtaagcatgttggatttaatcctt--ttattgatgttgatattagattgatgtaatgtt--ctgttccacttagtc----ttataataagactgctttcat------gtagTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCGTGGCGCTGAATTCGAAGGGGCTGTCATTGCACTGTTCCATCTGTTGATT
                                                                           | |   | | | |   | |   |  | | || ||     |||   | | || |   ||  || | |     |||     ||   |    | || ||| ||      | ||||| || |||||||||||||| ||||||||||| || || || ||||||||||| |||||||| ||||| ||||| ||||| || ||||||||| | || 
gttagcatctgcttctttttctgggattttttttaattaatttatgattttgaacatggaatatttgaagaagctttattgtctagcagccagtgtctggtgaatggtgggcccattttctgggtggaccattaactctactgtcaagtagtgattgctaatgaattgttttgatcaattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGTGGTCGTGGAGCTGAATTTGAAGGTGCTGTTATTGCTCTCTTCCATCTGCTAATA

upper sequence: GRMZM2G130987_T02 (Zea mays), 3'ss of exon 3
lower sequence: Vv10s0003g00710.t01 (Vitis vinifera), 3'ss of exon 1
gtaagcatgttggatttaatccttttattgatgttgatattagat-tgatgtaatgttctgttccacttagtcttataataa-gactgctttcat------gtagTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCGTGGCGCTGAATTCGAAGGGGCTGTCATTGCACTGTTCCATCTGTTGATT
   |  || | | |   | |  | |  |  ||| || | | |  | ||   | |   |    || |||   ||  ||| | |  | || ||| ||      ||||||| || |||||||||||||| ||||||||||| || || || || | || ||| | |||||| ||||| | ||| ||||| || ||| ||||| | |  
--tactatctagcagccagtg-tctagtgaatggtggtctcatttctgggttgaccattaactctact--atcaaatagtgataattgtttttatcaattggtagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACTACTATTAATAGCGATCATGGAGTTGAATTTGAAGGTGTTGTTATTGCTCTCTTCTATCTGCTAACA

upper sequence: GRMZM2G130987_T02 (Zea mays), 3'ss of exon 3
lower sequence: Vv00s1338g00020.t01 (Vitis vinifera), 3'ss of exon 2
--------------------------------------------------------------------------gtaagcatgttggatttaatcctt--ttattgatgttgatattagattgatgtaatgtt--ctgttccacttagtc----ttataataagactgctttcat------gtagTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCGTGGCGCTGAATTCGAAGGGGCTGTCATTGCACTGTTCCATCTGTTGATT
                                                                           | | | | | | |   | |   |  | | || ||     |||   | | || |   ||  || | |     |||     ||   |    | || ||| ||      | ||||| || |||||||||||||| ||||||||||| || || || ||||||||||| |||||||| ||||| ||||| ||||| || ||||||||| | || 
gttagcatctggttctttttctgggattttttttaattaatttatgattttgaacatggaatatttgaagaagctttatcgtctagcagccagtgtctggtgaatggtgggcccattttctgggtgaaccattaactctactgtcaagtagtgattgctaatgaattgttttgatcaattggcagTGAAAACATCATCTGGAAGGCTTTTAGCCCCACCACTATTAATAGTGGTCGTGGAGCTGAATTTGAAGGTGCTGTTATTGCTCTCTTCCATCTGCTAATA

upper sequence: GRMZM2G130987_T02 (Zea mays), 3'ss of exon 3
lower sequence: PP1S114_48V6.1 (Physcomitrella patens), 3'ss of exon 3
-------gtaagcatgttggatttaatccttttattgatgttgatattagattgatgtaatgttctgttccacttagtcttataataagactgctttcatgtagTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCGTGGCGCTGAATTCGAAGGGGCTGTCATTGCACTGTTCCATCTGTTGATT
       | ||  |  ||  |||||         | |   | |   |  |||| |  || ||  ||| || |   | |||  ||||     || ||||  | ||||| || ||||||||||||||||||||||| || || ||||||||||||||||| ||||| ||||| || ||||| ||||| || ||||| ||  |  | 
cagcgcagcaattacattttatttaggtacac-gtagtcctggtcctctgatttacttagtgaactgatcaagggaatctgctaat---gttgatttctcgcagTGAAAACATCATCTGGAAGGCATTTAGCCCAACTACTATCAACAGTGGTCGTGGAGCTGAGTTCGAGGGCGCTGTTATTGCTCTCTTCCACCTTCTTTTC

upper sequence: GRMZM2G130987_T02 (Zea mays), 3'ss of exon 3
lower sequence: EFJ11193 (Selaginella moellendorffii), 3'ss of exon 2
gtaagcatgttggatttaatccttttattgatgttgatattagattgatgtaatgttctgttcca-cttagtcttataataagactgctttcatg-tagTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCGTGGCGCTGAATTCGAAGGGGCTGTCATTGCACTGTTCCATCTGTTGATT
                                       | |||  ||     | |||| ||| | ||  |  || |  |   | ||  |   ||  |||||||| |||||||||||||| ||||| || || |||||||||||||| ||||| ||||| ||||| || ||| ||||||| |||||||| || ||||| 
--------------------------------------gtgaga--gaaacctttttcttttcaagctctgattttttct---attgtatctgtgacagTGAGAACATCATCTGGAAGGCGTTTAGTCCGACTACCATCAACAGTGGCCGTGGAGCTGAGTTCGAGGGAGCTATCATTGCTCTGTTCCACCTCTTGATC

upper sequence: GRMZM2G130987_T02 (Zea mays), 3'ss of exon 3
lower sequence: EFJ15673 (Selaginella moellendorffii), 3'ss of exon 2
gtaagcatgttggatttaatccttttattgatgttgatattagattgatgtaatgttctgttccacttagtcttataataagactgctttcatgtagTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCGTGGCGCTGAATTCGAAGGGGCTGTCATTGCACTGTTCCATCTGTTGATT
                                  ||| |  | |    |    | | | | ||   ||| |  |||  |  |||||         |||||||  |||||||||||||| ||||| || || |||||||||||||| ||||| ||||| || || || ||| ||||||| || ||||| || ||||| 
---------------------------------gtgagag-aaaccttttccttttccagctctgattatttctattgt--gactgtg-----acagTGAGACCATCATCTGGAAGGCGTTTAGTCCGACTACCATCAACAGTGGCCGTGGAGCTGAGTTTGAGGGAGCTATCATTGCTCTCTTCCACCTCTTGATC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31361484|gb|CD445841.1|CD445841
EST:     GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTG                         TGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
genomic: GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatgt ... tttcatgtagTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
EST: gi|32848889|gb|CD988570.1|CD988570
EST:     GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTG                         TGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
genomic: GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatgt ... tttcatgtagTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
EST: gi|32825328|gb|CD965050.1|CD965050
EST:     GATCTGGTATTTCTCTGTTCATTGCTACCAATATCTG                         TGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCGTCAACAGTGGTCG
genomic: GATCTGGTATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatgt ... tttcatgtagTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
EST: gi|20300449|gb|BQ163392.1|BQ163392
EST:     GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTG                         TGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTTGTCG
genomic: GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatgt ... tttcatgtagTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
EST: gi|33091773|gb|CF051767.1|CF051767
EST:     GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTG                         TGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
genomic: GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatgt ... tttcatgtagTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
EST: gi|32792992|gb|CD945228.1|CD945228
EST:     GATCTGGTATTTCTCTGTTCATTGCTACCAATATCTG                         TGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
genomic: GATCTGGTATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatgt ... tttcatgtagTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
EST: gi|32935555|gb|CF040367.1|CF040367
EST:     GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTG                         TGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
genomic: GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatgt ... tttcatgtagTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
EST: gi|20300676|gb|BQ163619.1|BQ163619
EST:     GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTG                         TGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTTGTCG
genomic: GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatgt ... tttcatgtagTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
EST: gi|22490947|gb|BU050870.1|BU050870
EST:     GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTG                         NGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACA
genomic: GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatgt ... tttcatgtagTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACA
EST: gi|32937511|gb|CF042330.1|CF042330
EST:     GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTG                         TGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
genomic: GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatgt ... tttcatgtagTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
EST: gi|67031913|gb|CO460662.1|CO460662
EST:     GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTG                         TGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
genomic: GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatgt ... tttcatgtagTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
EST: gi|149111354|gb|EE294857.2|EE294857
EST:     GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTG                         TGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
genomic: GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatgt ... tttcatgtagTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
EST: gi|44681773|gb|CK786821.1|CK786821
EST:     GTTATGGTTTGGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTG                         TGAGAATATCATCTGGAAGGCATTTAGCCCC-CAACCATCAACAGTGGTCG
genomic: GTTATGGTTTGGG-ATCTGGTATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatgt ... tttcatgtagTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
EST: gi|32847359|gb|CD987040.1|CD987040
EST:     GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTG                         TGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
genomic: GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatgt ... tttcatgtagTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
EST: gi|31350934|gb|CD435291.1|CD435291
EST:     GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTG                         TGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
genomic: GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatgt ... tttcatgtagTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
EST: gi|32847253|gb|CD986934.1|CD986934
EST:     TTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTGCCAATATCTG                         TGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
genomic: TTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatgt ... tttcatgtagTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
EST: gi|211074842|gb|FK968208.1|FK968208
EST:     GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTG                         TGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
genomic: GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatgt ... tttcatgtagTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
EST: gi|31359604|gb|CD443961.1|CD443961
EST:     GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTG                         TGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
genomic: GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatgt ... tttcatgtagTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
EST: gi|32828186|gb|CD967864.1|CD967864
EST:     GATCTGGTATTTCTCTGTTCATTGCTACCAATATCTG                         TGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
genomic: GATCTGGTATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatgt ... tttcatgtagTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
EST: gi|31351103|gb|CD435460.1|CD435460
EST:     GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTG                         TGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
genomic: GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatgt ... tttcatgtagTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
EST: gi|31360378|gb|CD444735.1|CD444735
EST:     GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTG                         TGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
genomic: GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatgt ... tttcatgtagTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
EST: gi|67035315|gb|CO463848.1|CO463848
EST:     GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTG                         TGAGAATATCATCTGGAAGGCATTTAGCCCCACA-CCATCAACAGTGGTCG
genomic: GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatgt ... tttcatgtagTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
EST: gi|32848280|gb|CD987961.1|CD987961
EST:     GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTG                         TGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
genomic: GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatgt ... tttcatgtagTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
EST: gi|19770483|gb|BQ035204.1|BQ035204
EST:     GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTG                         TGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTTGTCG
genomic: GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatgt ... tttcatgtagTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
EST: gi|149008958|gb|EE041174.2|EE041174
EST:     GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTG                         TGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
genomic: GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatgt ... tttcatgtagTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
EST: gi|67037304|gb|CO464154.1|CO464154
EST:     GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTG                         TGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
genomic: GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatgt ... tttcatgtagTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
EST: gi|67029660|gb|CO458409.1|CO458409
EST:     GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTG                         TGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
genomic: GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatgt ... tttcatgtagTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
EST: gi|67035173|gb|CO463706.1|CO463706
EST:     GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTG                         TGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
genomic: GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatgt ... tttcatgtagTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
EST: gi|32945539|gb|CF050358.1|CF050358
EST:     GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTG                         TGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
genomic: GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatgt ... tttcatgtagTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
EST: gi|67042883|gb|CO469138.1|CO469138
EST:     GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTG                         TGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATNCA-CAGTGGTC
genomic: GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatgt ... tttcatgtagTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCAT-CAACAGTGGTC
EST: gi|149109194|gb|EE190067.2|EE190067
EST:     GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTG                         TGAGAATATCATCTGGAAAGCATTTAG
genomic: GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatgt ... tttcatgtagTGAGAATATCATCTGGAAGGCATTTAG
EST: gi|148953634|gb|EC898991.2|EC898991
EST:     GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTG                         TGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
genomic: GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatgt ... tttcatgtagTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
EST: gi|148939934|gb|EC884655.2|EC884655
EST:     GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTG                         TGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
genomic: GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatgt ... tttcatgtagTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
EST: gi|31360149|gb|CD444506.1|CD444506
EST:     GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTG                         TGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
genomic: GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatgt ... tttcatgtagTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
EST: gi|149113040|gb|EE295813.2|EE295813
EST:     GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTG                         TGAGAATATCATCTGGAAGGCATTTAGCCC
genomic: GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatgt ... tttcatgtagTGAGAATATCATCTGGAAGGCATTTAGCCC
EST: gi|47961762|gb|CN844471.1|CN844471
EST:     GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTG                         TGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
genomic: GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatgt ... tttcatgtagTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
EST: gi|31353192|gb|CD437549.1|CD437549
EST:     GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTG                         TGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
genomic: GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatgt ... tttcatgtagTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
EST: gi|32847264|gb|CD986945.1|CD986945
EST:     GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTG                         TGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
genomic: GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatgt ... tttcatgtagTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
EST: gi|31360614|gb|CD444971.1|CD444971
EST:     GGTTATGGTTTGGGATCTGGGATTTCTCTGTTCATTGCTACCAATATCTG                         GGAGAATATCATCTG
genomic: GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatgt ... tttcatgtagTGAGAATATCATCTG
EST: gi|148932797|gb|EE285481.2|EE285481
EST:     GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTG                         TGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
genomic: GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatgt ... tttcatgtagTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
EST: gi|31356381|gb|CD440738.1|CD440738
EST:     GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTG                         TGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG
genomic: GGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatgt ... tttcatgtagTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattgatgtaatgttctgttccacttagtcttataataagactgctttcatgtagTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACCATCAACAGTGGTCGTGGCGCTGAATTCGAAGGGGCTGTCATTGCACTGTTCCATCTGTTGATT
 gattgat  putative branch site (score: 4)
                                         ctgctttc  putative PPT
                        ttagtcttataataa  TA-rich tract