Sequence
atgc intronic sequence ATGC exonic sequencegtttgtttagtcggtactctgtattaattctgatctgcatctggttttacatttcctaactgattctagatctaaactgccttctgtcatttgctttgctcgcgttgattcccagCCACAATCGAAGAATGGTATCAACAGCTTTGGTGGTCTTGGAGCAACCCTTGTTGACTCACTTGATACCCTATACATAATGGGCCTGAAAGATGAATTTC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G130889_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os04g51690.1 (Oryza sativa), 3'ss of exon 3
gtttgtttagtcggtactctgtattaattctgatctgcatctggttttacatttcctaactgattctagatctaaactgccttctgtcatttgctttgctcgcgttgattcccagCCACAATCGAAGAATGGTATCAACAGCTTTGGTGGTCTTGGAGCAACCCTTGTTGACTCACTTGATACCCTATACATAATGGGCCTGAAAGATGAATTTC
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gtttgtttagtcaacattctgt--tatttctattgcccttctaactta------tctgagtga-----gctctgaagtgtcttctgtatttttctttgttcaaattattttccagCCACAATCAAAGAATGGTGTCAATAGCTTTGGTGGTCTCGGGGCAACTCTTGTGGACTCACTTGATACACTGTATATAATGGGCCTAAAGGATGAATTTC
upper sequence: GRMZM2G130889_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA08G23730.1 (Glycine max), 3'ss of exon 3
gtttgtttagtcggtactctgtattaattctgatctgcatctggttttacatttcctaactgat-tctagatctaaactgccttctg-tcatttgctttgctcgcgttgattcccagCCACAATCGAAGAATGGTATCAACAGCTTTGGTGGTCTTGGAGCAACCCTTGTTGACTCACTTGATACCCTATACATAATGGGCCTGAAAGATGAATTTC
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-------------atgataaaaattggtt-tgtttttcgtaaaaataattattt--tatttgttctttaaatttacattttttaaaaattaattgttatctttttggtg-ctaccagCCACAATCAAAGAATGGTGTCAATAGCTTTGGAGGTCTTGGAGCAACTTTAATAGATTCTCTTGATACACTATATATTATGGGTCTCAACGAACAGTTTC
upper sequence: GRMZM2G130889_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA07G02290.1 (Glycine max), 3'ss of exon 2
gtttgtttagtcggtactctgtattaattctgatctgcatc-tggttttacatttcctaactgattctagatctaaactgccttctgtcatttgctttgctcgcgttgattcccagCCACAATCGAAGAATGGTATCAACAGCTTTGGTGGTCTTGGAGCAACCCTTGTTGACTCACTTGATACCCTATACATAATGGGCCTGAAAGATGAATTTC
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-----------taaaatattggtttctttctcgtaaaaataattattttatttgttctttaaatttacattttttaaaaattaatcgttattt-tttttttggtgcta----ccagCCACAATCAAAGAATGGTGTCAATAGCTTTGGAGGTCTTGGAGCAACTTTAATAGATTCTCTTGATACGCTATATATTATGGGTCTCAATGAACAGTTTC
upper sequence: GRMZM2G130889_T02 (Zea mays), 3'ss of exon 3
lower sequence: Vv09s0054g00370.t01 (Vitis vinifera), 3'ss of exon 3
---gtttgtttagtcggtactctgtattaattctgatctgcatctggttttacatttcctaactgattctagatctaaactgccttctgtcatttgctttgctcgcgttgattcccagCCACAATCGAAGAATGGTATCAACAGCTTTGGTGGTCTTGGAGCAACCCTTGTTGACTCACTTGATACCCTATACATAATGGGCCTGAAAGATGAATTTC
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attcctagatttgtggcatttgtatttccatagtgtttatgatgttgtttcattttatccaa---gttctacaactaacatgc--------aattgtttt-------ttccttaacagCCACAATCCAAGAATGGTGTCAATAGTTTTGGAGGTCTTGGAGCAACATTAATAGATTCTCTTGATACATTATATATAATGGGACTAGATGAGCAGTTCCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19057740|gb|BM736407.1|BM736407EST: ATGCTTGGAATTCTTATGTTAAGTATGCCTGGGGAATGGACGAGCTTCAG CCACAATCGAAGAATGGTATCAACAGCTTTGGTGGTCTTGGAGCAACCCTT
genomic: ATGCTTGGAATTCTTATGTTAAGTATGCCTGGGGAATGGACGAGCTTCAGgtttgtttag ... tgattcccagCCACAATCGAAGAATGGTATCAACAGCTTTGGTGGTCTTGGAGCAACCCTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgattctagatctaaactgccttctgtcatttgctttgctcgcgttgattcccagCCACAATCGAAGAATGGTATCAACAGCTTTGGTGGTCTTGGAGCAACCCTTGTTGACTCACTTGATACCCTATACATAATGGGCCTGAAAGATGAATTTC
ttccc CT-rich tract
atctaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttgtttagtcggtactctgtattaattctgatctgcatctggttttacatttcctaactgattctagatctaaactgccttctgtcatttgctttgctcgcgttgattcccagCCACAATCGAAGAATGGTATCAACAGCTTTGGTGGTCTTGGAGCAACCCTTGTTGACTCACTTGATACCCTATACATAATGGGCCTGAAAGATGAATTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG