Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatttgtccttctcaatctttttcttttggttcagtgctaaagttatctgagttgcccaagtctggatttgatcggatccttatttggtggttggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG

Basic information

species Zea mays
transcript GRMZM2G130398_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G130398_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g59600.1 (Oryza sativa), 3'ss of exon 3
gtaagatttgtccttctcaatctttttcttttggttcagtgctaaagttatctgagttgcccaagtctggatttgatcggatccttatttggtggttggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG
                        | |||      | |  | |||| ||    ||| ||      | ||   | ||| |       ||||| | |||||| ||||||||||| |||||||| ||||| || |||||||||||||| ||||| ||  | ||||||||||| |||||| | ||||||||||||
--------------------gtaatgtctgcaaactgatagataaatttcaaagaggtgtattt-tttgtgctcgattga-----catttgtttgttggttctttagGGTGTGGAGAAGCTAGTAACTTCGAAGATGATGCTGGAGGGATCTAATAGGAGGATCCATTCAGTGCACTGGCACTCTGGCTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148983025|gb|EE028929.2|EE028929
EST:     GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG                         GGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
genomic: GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTGgtaagatttg ... ggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
EST: gi|78081016|gb|DV509428.1|DV509428
EST:     GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG                         GGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
genomic: GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTGgtaagatttg ... ggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
EST: gi|211351912|gb|FL214804.1|FL214804
EST:     GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG                         GGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
genomic: GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTGgtaagatttg ... ggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
EST: gi|211421483|gb|FL073183.1|FL073183
EST:     GACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG                         GGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
genomic: GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTGgtaagatttg ... ggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
EST: gi|71767052|gb|DR964989.1|DR964989
EST:     GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG                         GGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
genomic: GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTGgtaagatttg ... ggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
EST: gi|211351916|gb|FL214808.1|FL214808
EST:     GACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG                         GGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
genomic: GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTGgtaagatttg ... ggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
EST: gi|149106947|gb|EE188848.2|EE188848
EST:     GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG                         GGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
genomic: GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTGgtaagatttg ... ggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
EST: gi|211354330|gb|FL214830.1|FL214830
EST:     GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG                         GGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
genomic: GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTGgtaagatttg ... ggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
EST: gi|211421481|gb|FL073181.1|FL073181
EST:     GACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG                         GGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
genomic: GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTGgtaagatttg ... ggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
EST: gi|211349504|gb|FL214790.1|FL214790
EST:     GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG                         GGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
genomic: GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTGgtaagatttg ... ggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
EST: gi|211354321|gb|FL214821.1|FL214821
EST:     GACTATTGTKGGGATCAAGTGCAAAGATGGCATTGTCCTG                         GGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
genomic: GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTGgtaagatttg ... ggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
EST: gi|148933477|gb|EC877180.2|EC877180
EST:     GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG                         GGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
genomic: GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTGgtaagatttg ... ggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
EST: gi|78089684|gb|DV518058.1|DV518058
EST:     GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG                         GGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
genomic: GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTGgtaagatttg ... ggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
EST: gi|211349502|gb|FL214788.1|FL214788
EST:     GACTATTGTTGGGATCAAGTGCAAACATGGCATTGTCCTG                         GGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
genomic: GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTGgtaagatttg ... ggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
EST: gi|19770141|gb|BQ034862.1|BQ034862
EST:     GACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG                         GGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
genomic: GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTGgtaagatttg ... ggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
EST: gi|149044661|gb|EE047635.2|EE047635
EST:     GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG                         GGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
genomic: GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTGgtaagatttg ... ggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
EST: gi|76913938|gb|DV165334.1|DV165334
EST:     GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG                         GGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
genomic: GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTGgtaagatttg ... ggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
EST: gi|32843121|gb|CD982802.1|CD982802
EST:     GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG                         GGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGAAAGGATCAAACCGA
genomic: GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTGgtaagatttg ... ggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
EST: gi|28566562|gb|CB278210.1|CB278210
EST:     GACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG                         GGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
genomic: GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTGgtaagatttg ... ggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
EST: gi|211351922|gb|FL214814.1|FL214814
EST:     GACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG                         GGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
genomic: GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTGgtaagatttg ... ggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
EST: gi|78106940|gb|DV525358.1|DV525358
EST:     GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG                         GGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
genomic: GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTGgtaagatttg ... ggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
EST: gi|37417861|gb|CF646590.1|CF646590
EST:     GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG                         GGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
genomic: GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTGgtaagatttg ... ggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
EST: gi|148949401|gb|EC894858.2|EC894858
EST:     GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG                         GGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
genomic: GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTGgtaagatttg ... ggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
EST: gi|211349508|gb|FL214794.1|FL214794
EST:     GACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG                         GGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
genomic: GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTGgtaagatttg ... ggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
EST: gi|211303552|gb|FL073177.1|FL073177
EST:     GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG                         GGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
genomic: GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTGgtaagatttg ... ggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
EST: gi|211354329|gb|FL214829.1|FL214829
EST:     GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG                         GGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
genomic: GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTGgtaagatttg ... ggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
EST: gi|29947590|gb|CB816734.1|CB816734
EST:     GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG                         GGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
genomic: GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTGgtaagatttg ... ggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
EST: gi|76289822|gb|DV029390.1|DV029390
EST:     GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG                         GGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
genomic: GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTGgtaagatttg ... ggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
EST: gi|149081024|gb|EE170124.2|EE170124
EST:     GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG                         GGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
genomic: GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTGgtaagatttg ... ggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
EST: gi|76280505|gb|DV020073.1|DV020073
EST:     GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG                         GGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
genomic: GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTGgtaagatttg ... ggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
EST: gi|148949400|gb|EC894857.2|EC894857
EST:     GACTATTGTTGGGATCAAGGGCAAAGATGGCATTGTCCTG                         GGTGTCGAGAAGCTGGTAACTTCAAAGATGATGCTGGAAGGATCAAACCGA
genomic: GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTGgtaagatttg ... ggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
EST: gi|211349515|gb|FL214801.1|FL214801
EST:     GACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG                         GGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
genomic: GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTGgtaagatttg ... ggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
EST: gi|211349514|gb|FL214800.1|FL214800
EST:     GACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG                         GGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
genomic: GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTGgtaagatttg ... ggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
EST: gi|211354317|gb|FL214817.1|FL214817
EST:     GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG                         GGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
genomic: GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTGgtaagatttg ... ggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
EST: gi|211303549|gb|FL073174.1|FL073174
EST:     GACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG                         GGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
genomic: GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTGgtaagatttg ... ggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
EST: gi|9254592|gb|BE345075.1|BE345075
EST:     GACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG                         GGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
genomic: GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTGgtaagatttg ... ggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
EST: gi|211354327|gb|FL214827.1|FL214827
EST:     GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG                         GGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
genomic: GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTGgtaagatttg ... ggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
EST: gi|211303550|gb|FL073175.1|FL073175
EST:     GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG                         GGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
genomic: GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTGgtaagatttg ... ggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
EST: gi|71317411|gb|DR795418.1|DR795418
EST:     GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG                         GGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
genomic: GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTGgtaagatttg ... ggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
EST: gi|211351924|gb|FL214816.1|FL214816
EST:     GACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG                         GGTGTCGAGAAGCTGGT
genomic: GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTGgtaagatttg ... ggtcctttagGGTGTCGAGAAGCTGGT
EST: gi|71449736|gb|DR830786.1|DR830786
EST:     GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG                         GGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
genomic: GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTGgtaagatttg ... ggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
EST: gi|148945160|gb|EC890360.2|EC890360
EST:     GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG                         GGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
genomic: GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTGgtaagatttg ... ggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
EST: gi|211421482|gb|FL073182.1|FL073182
EST:     GACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG                         GGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
genomic: GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTGgtaagatttg ... ggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
EST: gi|211303551|gb|FL073176.1|FL073176
EST:     GACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG                         GGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
genomic: GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTGgtaagatttg ... ggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
EST: gi|32862844|gb|CF002526.1|CF002526
EST:     GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG                         GGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
genomic: GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTGgtaagatttg ... ggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
EST: gi|211349507|gb|FL214793.1|FL214793
EST:     GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG                         GGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
genomic: GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTGgtaagatttg ... ggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
EST: gi|149009039|gb|EE041221.2|EE041221
EST:     GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG                         GGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
genomic: GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTGgtaagatttg ... ggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
EST: gi|60351410|gb|DN218383.1|DN218383
EST:     GACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG                         GGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
genomic: GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTGgtaagatttg ... ggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
EST: gi|211351915|gb|FL214807.1|FL214807
EST:     GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG                         GGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA
genomic: GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTGgtaagatttg ... ggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 40 (upstream exon), 48 (downstream exon)
Score: 534

GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTGgtaagatttg ... ggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG


Block sizes: 40 (upstream exon), 49 (downstream exon)
Score: 423

GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTGgtaagatttg ... ggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG


Block sizes: 40 (upstream exon), 48 (downstream exon)
Score: 516

GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTGgtaagatttg ... ggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG


Block sizes: 40 (upstream exon), 48 (downstream exon)
Score: 332

GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTGgtaagatttg ... ggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgagttgcccaagtctggatttgatcggatccttatttggtggttggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG
                  atttgat  putative branch site (score: 332)
                                               tccttt  putative PPT
                                ttattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagatttgtccttctcaatctttttcttttggttcagtgctaaagttatctgagttgcccaagtctggatttgatcggatccttatttggtggttggtcctttagGGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG