Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atctctaatgcgctgtacattcctagatatcagaagttgcatggaattgaaaaggcatgcatctttactcctgtcagtcataggtgttctttttatacagGTATCTCAAAGGAGCCCCAGAAGATCTTTCAGAATTTTTGCAACTA

Basic information

species Zea mays
transcript GRMZM2G130230_T03
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|93283386|gb|EB675650.1|EB675650
EST:     TATGCTAGATCAAATCTTTCTGATGATGGGTTAAGAGAACGCATTCGTGG                         GTATCTCAAAGGAGCCCCAGAAGATCTTTCAGAATTTTTGCAACTA
genomic: TATGCTAGATCAAATCTTTCTGATGATGGGTTAAGAGAACGCATTCGTGGgtaatgatcc ... ttttatacagGTATCTCAAAGGAGCCCCAGAAGATCTTTCAGAATTTTTGCAACTA
EST: gi|71449499|gb|DR830549.1|DR830549
EST:     TATGCTAGATCAAATCTTTCTGATGATGGGTTAAGAGAACGCATTCGTGG                         GTATCTCAAAGGAGCCCCAGAAGATCTTTCAGAATTTTTGCAACTA
genomic: TATGCTAGATCAAATCTTTCTGATGATGGGTTAAGAGAACGCATTCGTGGgtaatgatcc ... ttttatacagGTATCTCAAAGGAGCCCCAGAAGATCTTTCAGAATTTTTGCAACTA
EST: gi|78083439|gb|DV511832.1|DV511832
EST:     TATGCTAGATCAAATCTTTCTGATGATGGGTTAAGAGAACGCATTCGTGG                         GTATCTCAAAGGAGCCCCAGAAGATCTTTCAGAATTTTTGCAACTA
genomic: TATGCTAGATCAAATCTTTCTGATGATGGGTTAAGAGAACGCATTCGTGGgtaatgatcc ... ttttatacagGTATCTCAAAGGAGCCCCAGAAGATCTTTCAGAATTTTTGCAACTA
EST: gi|71436592|gb|DR817642.1|DR817642
EST:     TATGCTAGATCAAATCTTTCTGATGATGGGTTAAGAGAACGCATTCGTGG                         GTATCTCAAAGGAGCCCCAGAAGATCTTTCAGAATTTTTGCAACTA
genomic: TATGCTAGATCAAATCTTTCTGATGATGGGTTAAGAGAACGCATTCGTGGgtaatgatcc ... ttttatacagGTATCTCAAAGGAGCCCCAGAAGATCTTTCAGAATTTTTGCAACTA
EST: gi|89757409|gb|DY687024.1|DY687024
EST:     TATGCTAGATCAAATCTTTCTGATGATGGGTTAAGAGAACGCATTCGTGG                         GTATCTCAAAGGAGCCCCAGAAGATCTTTCAGAATTTTTGCAACTA
genomic: TATGCTAGATCAAATCTTTCTGATGATGGGTTAAGAGAACGCATTCGTGGgtaatgatcc ... ttttatacagGTATCTCAAAGGAGCCCCAGAAGATCTTTCAGAATTTTTGCAACTA
EST: gi|71447340|gb|DR828390.1|DR828390
EST:     TATGCTAGATCAAATCTTTCTGATGATGGGTTAAGAGAACGCATTCGTGG                         GTATCTCAAAGGAGCCCCAGAAGATCTTTCAGAATTTTTGCAACTA
genomic: TATGCTAGATCAAATCTTTCTGATGATGGGTTAAGAGAACGCATTCGTGGgtaatgatcc ... ttttatacagGTATCTCAAAGGAGCCCCAGAAGATCTTTCAGAATTTTTGCAACTA
EST: gi|50339442|gb|CO534568.1|CO534568
EST:     TATGCTAGATCAAATCTTTCTGATGATGGGTTAAGAGAACGCATTCGTGG                         GTATCTCAAAGGAGCCCCAGAAGATCTTTCAGAATTTTTGCAACTA
genomic: TATGCTAGATCAAATCTTTCTGATGATGGGTTAAGAGAACGCATTCGTGGgtaatgatcc ... ttttatacagGTATCTCAAAGGAGCCCCAGAAGATCTTTCAGAATTTTTGCAACTA
EST: gi|74237092|gb|DT645006.1|DT645006
EST:     TATGCTAGATCAAATCTTTCTGATGATGGGTTAAGAGAACGCATTCGTGG                         GTATCTCAAAGGAGCCCCAGAAGATCTTTCAGAATTTTTGCAACTA
genomic: TATGCTAGATCAAATCTTTCTGATGATGGGTTAAGAGAACGCATTCGTGGgtaatgatcc ... ttttatacagGTATCTCAAAGGAGCCCCAGAAGATCTTTCAGAATTTTTGCAACTA
EST: gi|71449885|gb|DR830935.1|DR830935
EST:     TATGCTAGATCAAATCTTTCTGATGATGGGTTAAGAGAACGCATTCGTGG                         GTATCTCAAAGGAGCCCCAGAAGATCTTTCAGAATTTTTGCAACTA
genomic: TATGCTAGATCAAATCTTTCTGATGATGGGTTAAGAGAACGCATTCGTGGgtaatgatcc ... ttttatacagGTATCTCAAAGGAGCCCCAGAAGATCTTTCAGAATTTTTGCAACTA
EST: gi|89759526|gb|DY688327.1|DY688327
EST:     TATGCTAGATCAAATCTTTCTGATGATGGGTTAAGAGAACGCATTCGTGG                         GTATCTCAAAGGAGCCCCAGAAGATCTTTCAGAATTTTTGCAACTA
genomic: TATGCTAGATCAAATCTTTCTGATGATGGGTTAAGAGAACGCATTCGTGGgtaatgatcc ... ttttatacagGTATCTCAAAGGAGCCCCAGAAGATCTTTCAGAATTTTTGCAACTA
EST: gi|78109778|gb|DV528194.1|DV528194
EST:     TATGCTAGATCAAATCTTTCTGATGATGGGTTAAGAGAACGCATTCGTGG                         GTATCTCAAAGGAGCCCCAGAAGATCTTTCAGAATTTTTGCAACTA
genomic: TATGCTAGATCAAATCTTTCTGATGATGGGTTAAGAGAACGCATTCGTGGgtaatgatcc ... ttttatacagGTATCTCAAAGGAGCCCCAGAAGATCTTTCAGAATTTTTGCAACTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgaaaaggcatgcatctttactcctgtcagtcataggtgttctttttatacagGTATCTCAAAGGAGCCCCAGAAGATCTTTCAGAATTTTTGCAACTA
                                       tgttcttttt  CT-rich tract
                                         ttctttttata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atctctaatgcgctgtacattcctagatatcagaagttgcatggaattgaaaaggcatgcatctttactcctgtcagtcataggtgttctttttatacagGTATCTCAAAGGAGCCCCAGAAGATCTTTCAGAATTTTTGCAACTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG