1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gttagtataggaccgtactgccaactaaactagtcaaatctcactggaacccttgttgggactgtatatgttgctgatacgggctttcacttgtttacagCATGCAGTTGGGTATGTAAACTCAG
species | Zea mays |
transcript | GRMZM2G129947_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGCCAGCGCGCCGGGGTGTTCGCCGTGATTCCACAAGCAGCGGCCATGAG CATGCAGTTGGGTATGTAAACTCAGEST: gi|148961279|gb|EE012002.2|EE012002
genomic: AGCCAGCGCGCCGGGGTGTTCGCCGTGATTCCACAAGCAGCGGCCATGAGgttggtctta ... ttgtttacagCATGCAGTTGGGTATGTAAACTCAG
EST: AGCCAGCGCGCCGGGGTGTTCGCCGTGATTCCACAAGCAGCCGCCATGAG CATGCAGTTGGGTATGTAAACTCAGEST: gi|148999499|gb|EE036464.2|EE036464
genomic: AGCCAGCGCGCCGGGGTGTTCGCCGTGATTCCACAAGCAGCGGCCATGAGgttggtctta ... ttgtttacagCATGCAGTTGGGTATGTAAACTCAG
EST: AGCCAGCGCGCCNGGGTGTTCGCCGTGATTCCACAAGCAGCGGCCATGAG CATGCAGTTGGGTATGTAAACTCAG
genomic: AGCCAGCGCGCCGGGGTGTTCGCCGTGATTCCACAAGCAGCGGCCATGAGgttggtctta ... ttgtttacagCATGCAGTTGGGTATGTAAACTCAG
ggaacccttgttgggactgtatatgttgctgatacgggctttcacttgtttacagCATGCAGTTGGGTATGTAAACTCAG
tgctgat putative branch site (score: 87)
ctttcactt putative PPT
tatatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtataggaccgtactgccaactaaactagtcaaatctcactggaacccttgttgggactgtatatgttgctgatacgggctttcacttgtttacagCATGCAGTTGGGTATGTAAACTCAG
- - - - - - - -tactgcc
- - - - - - - - - - - aactaaa
- - - - - - - - - - - - - - - - - - - - -cactgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgctg