1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gacatcggctccttttcggttaccattgcagatagacattggttcttgtccagttttcttctatgaataggtatagtcactgaaatgtttatccatacagATAGACAGTCCTTCCTGAACACCTCAAAGTGGATCGATGAAGTGCGCACCGAGAGAGGTGGCGATGTGATAATCGTGCTCGTTGGCAACAAAACTGATCT
species | Zea mays |
transcript | GRMZM2G128771_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGCTACATCAGGGACTCTTCTGTTGCGGTGGTTGTTTATGATGTATCCA ATAGACAGTCCTTCCTGAACACCTCAAAGTGGATCGATGAAGTGCGCACCGEST: gi|211449139|gb|FL349634.1|FL349634
genomic: AAGCTACATCAGGGACTCTTCTGTTGCGGTGGTTGTTTATGATGTATCCAgtgagtcact ... atccatacagATAGACAGTCCTTCCTGAACACCTCAAAGTGGATCGATGAAGTGCGCACCG
EST: AAGCTACATCAGGGACTCTTCTGTTGCGGTGGTTGTTTATGATGTATCCA ATAGACAGTCCTTCCTGGAACACCTCAAAGTGGATCGATGAAGTGCGCACCEST: gi|37387848|gb|CF631126.1|CF631126
genomic: AAGCTACATCAGGGACTCTTCTGTTGCGGTGGTTGTTTATGATGTATCCAgtgagtcact ... atccatacagATAGACAGTCCTTCCTG-AACACCTCAAAGTGGATCGATGAAGTGCGCACC
EST: AAGCTACATCAGGGACTCTTCTGTTGCGGTGGTTGTTTATGATGTATCCA ATAGACAGTCCTTCCTGAACACCTCAAAGTGGATCGATGAAGTGCGCACCGEST: gi|37379915|gb|CF626729.1|CF626729
genomic: AAGCTACATCAGGGACTCTTCTGTTGCGGTGGTTGTTTATGATGTATCCAgtgagtcact ... atccatacagATAGACAGTCCTTCCTGAACACCTCAAAGTGGATCGATGAAGTGCGCACCG
EST: AAGCTACATCAGGGACTCTTCTGTTGCGGTGGTTGTTTATGATGTATCCA ATAGACAGTCCTTCCTGAACACCTCAAAGTGGATCGATGAAGTGCGCACCGEST: gi|40335969|gb|CK370039.1|CK370039
genomic: AAGCTACATCAGGGACTCTTCTGTTGCGGTGGTTGTTTATGATGTATCCAgtgagtcact ... atccatacagATAGACAGTCCTTCCTGAACACCTCAAAGTGGATCGATGAAGTGCGCACCG
EST: AAGCTACATCAGGGACTCTTCTGTTGCGGTGGTTGTTTATGATGTATCCA ATAGACAGTCCTTCCTGAACACCTCAAAGTGGATCGATGAAGTGCGCACCGEST: gi|211481374|gb|FL368109.1|FL368109
genomic: AAGCTACATCAGGGACTCTTCTGTTGCGGTGGTTGTTTATGATGTATCCAgtgagtcact ... atccatacagATAGACAGTCCTTCCTGAACACCTCAAAGTGGATCGATGAAGTGCGCACCG
EST: AAGCTACATCAGGGACTCTTCTGTTGCGGTGGTTGTTTATGATGTATCCA ATAGACAGTCCTTCCTGAACACCTCAAAGTGGATCGATGAAGTGCGCACCGEST: gi|211492534|gb|FL462461.1|FL462461
genomic: AAGCTACATCAGGGACTCTTCTGTTGCGGTGGTTGTTTATGATGTATCCAgtgagtcact ... atccatacagATAGACAGTCCTTCCTGAACACCTCAAAGTGGATCGATGAAGTGCGCACCG
EST: AAGCTACATCAGGGACTCTTCTGTTGCGGTGGTTGTTTATGATGTATCCA ATAGACAGTCCTTCCTGAACACCTCAAAGTGGATCGATGAAGTGCGCACCG
genomic: AAGCTACATCAGGGACTCTTCTGTTGCGGTGGTTGTTTATGATGTATCCAgtgagtcact ... atccatacagATAGACAGTCCTTCCTGAACACCTCAAAGTGGATCGATGAAGTGCGCACCG
ttgtccagttttcttctatgaataggtatagtcactgaaatgtttatccatacagATAGACAGTCCTTCCTGAACACCTCAAAGTGGATCGATGAAGTGCGCACCGAGAGAGGTGGCGATGTGATAATCGTGCTCGTTGGCAACAAAACTGATCT
tttatcc CT-rich tract
aaatgtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gacatcggctccttttcggttaccattgcagatagacattggttcttgtccagttttcttctatgaataggtatagtcactgaaatgtttatccatacagATAGACAGTCCTTCCTGAACACCTCAAAGTGGATCGATGAAGTGCGCACCGAGAGAGGTGGCGATGTGATAATCGTGCTCGTTGGCAACAAAACTGATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - ggctcct
- - - - - - - - - - - -cattgca
- - - - - - - - - - - - - - - - - - - - -gttcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cactgaa