1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatgttgtgtcttgggtgcatatgggtgtatgggaaggagattactttaggtaggactatttctataagtttaccttgggatggttttgagtggacttcctattgctttcaaaacggctctccatttccatttctggattatacttgatatcatctgcacttcactgtgggcctcatctttctgtagATAGAACGTGGGGGTAAAGATGTTACCATTACTGCGTTCTCCAAGATGGTTGGCTATGCTCTCCAG
species | Zea mays |
transcript | GRMZM2G128121_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGCTGAAGTGCTTGATTCTAGTTTTTGCCTACCGATTGGCAAAGCTAAG ATAGAACGTGGGGGTAAAGATGTTACCATTACTGCGTTCTCCAAGATGGTTEST: gi|71325375|gb|DR799361.1|DR799361
genomic: CTGCTGAAGTGCTTGATTCTAGTTTTTGCCTACCGATTGGCAAAGCTAAGgtatgttgtg ... ctttctgtagATAGAACGTGGGGGTAAAGATGTTACCATTACTGCGTTCTCCAAGATGGTT
EST: CTGCTGAAGTGCTTGATTCTAGTTTTTGCCTACCGATTGGCAAAGCTAAG ATAGAACGTGGGGGTAAAGATGTTACCATTACTGCGTTCTCCAAGATGGTTEST: gi|93013442|gb|EB638962.1|EB638962
genomic: CTGCTGAAGTGCTTGATTCTAGTTTTTGCCTACCGATTGGCAAAGCTAAGgtatgttgtg ... ctttctgtagATAGAACGTGGGGGTAAAGATGTTACCATTACTGCGTTCTCCAAGATGGTT
EST: CTGCTGAAGTGCTTGATTCTAGTTTTTGCCTACCGATTGGCAAAGCTAAG ATAGAACGTGGGGGTAAAGATGTTACCATTACTGCGTTCTCCAAGATGGTTEST: gi|71331066|gb|DR802363.1|DR802363
genomic: CTGCTGAAGTGCTTGATTCTAGTTTTTGCCTACCGATTGGCAAAGCTAAGgtatgttgtg ... ctttctgtagATAGAACGTGGGGGTAAAGATGTTACCATTACTGCGTTCTCCAAGATGGTT
EST: AGTGCTTGATTCTAGTTTTTGCCTACCGATTGGCAAAGCTAAG ATAGAACGTGGGGGTAAAGATGTTACCATTACTGCGTTCTCCAAGATGGTTEST: gi|211386006|gb|FL329690.1|FL329690
genomic: AGTGCTTGATTCTAGTTTTTGCCTACCGATTGGCAAAGCTAAGgtatgttgtg ... ctttctgtagATAGAACGTGGGGGTAAAGATGTTACCATTACTGCGTTCTCCAAGATGGTT
EST: CTGCTGAAGTGCTTGATTCTAGTTTTTGCCTACCAATTGGCAAAGCTAAG ATAGAACGTGGGGGTAAAGATGTTACCATTACTGCGTTCTCCAAGATGGTTEST: gi|211417439|gb|FL345693.1|FL345693
genomic: CTGCTGAAGTGCTTGATTCTAGTTTTTGCCTACCGATTGGCAAAGCTAAGgtatgttgtg ... ctttctgtagATAGAACGTGGGGGTAAAGATGTTACCATTACTGCGTTCTCCAAGATGGTT
EST: CTGCTGAAGTGCTTGATTCTAGTTTTTGCCTACCGATTGGCAAAGCTAAG ATAGAACGTGGGGGTAAAGATGTTACCATTACTGCGTTCTCCAAGATGGTTEST: gi|149109553|gb|EE293365.2|EE293365
genomic: CTGCTGAAGTGCTTGATTCTAGTTTTTGCCTACCGATTGGCAAAGCTAAGgtatgttgtg ... ctttctgtagATAGAACGTGGGGGTAAAGATGTTACCATTACTGCGTTCTCCAAGATGGTT
EST: AGTTTTTGCCTACCGATTGGCAAAGCTAAG ATAGAACGTGGGGGTAAAGATGTTACCATTACTGCGTTCTCCAAGATGGTTEST: gi|4730273|gb|AI649439.1|AI649439
genomic: AGTTTTTGCCTACCGATTGGCAAAGCTAAGgtatgttgtg ... ctttctgtagATAGAACGTGGGGGTAAAGATGTTACCATTACTGCGTTCTCCAAGATGGTT
EST: TGCTGAAGTGC-TGATTCTAGTTTTTGCCTACCGATTGGCAAAGCTAAG ATAGAACGTGGGGGTAAAGATGTTACCATTACTGCGTTCTCCAAGATGGTTEST: gi|78081841|gb|DV510253.1|DV510253
genomic: TGCTGAAGTGCTTGATTCTAGTTTTTGCCTACCGATTGGCAAAGCTAAGgtatgttgtg ... ctttctgtagATAGAACGTGGGGGTAAAGATGTTACCATTACTGCGTTCTCCAAGATGGTT
EST: CTGCTGAAGTGCTTGATTCTAGTTTTTGCCTACCGATTGGCAAAGCTAAG ATAGAACGTGGGGGTAAAGATGTTACCATTACTGCGTTCTCCAAGATGGTTEST: gi|78180140|gb|DV550513.1|DV550513
genomic: CTGCTGAAGTGCTTGATTCTAGTTTTTGCCTACCGATTGGCAAAGCTAAGgtatgttgtg ... ctttctgtagATAGAACGTGGGGGTAAAGATGTTACCATTACTGCGTTCTCCAAGATGGTT
EST: CTGCTGAAGTGCTTGATTCTAGTTTTTGCCTACCGATTGGCAAAGCTAAG ATAGAACGTGGGGGTAAAGATGTTACCATTACTGCGTTCTCCAAGATGGTTEST: gi|12045820|gb|BF727959.1|BF727959
genomic: CTGCTGAAGTGCTTGATTCTAGTTTTTGCCTACCGATTGGCAAAGCTAAGgtatgttgtg ... ctttctgtagATAGAACGTGGGGGTAAAGATGTTACCATTACTGCGTTCTCCAAGATGGTT
EST: TGCTGAAGTGCTTGATTCTAGTTTTTGCCTACCGATTGGTATTAGCTAAG ATAGAACGTGGGGGTAAAGATGTTACCATTACTGCGTTCTCCAAGATGGTEST: gi|31348876|gb|CD433233.1|CD433233
genomic: TGCTGAAGTGCTTGATTCTAGTTTTTGCCTACCGATTGGCA-AAGCTAAGgtatgttgtg ... ctttctgtagATAGAACGTGGGGGTAAAGATGTTACCATTACTGCGTTCTCCAAGATGGT
EST: CTGCTGAAGTGCTTGATTCTAGTTTTTGCCTACCGATTGGCAAAGCTAAG ATAGAACGTGGGGGTAAAGATGTTACCATTACTGCGTTCTCCAAGATGGTTEST: gi|76290822|gb|DV030390.1|DV030390
genomic: CTGCTGAAGTGCTTGATTCTAGTTTTTGCCTACCGATTGGCAAAGCTAAGgtatgttgtg ... ctttctgtagATAGAACGTGGGGGTAAAGATGTTACCATTACTGCGTTCTCCAAGATGGTT
EST: TGAAGTGCTTGATTCTAGTTTTTGCCTACCGATTGGCAAAGCTAAG ATAGAACGTGGGGGTAAAGATGTTACCATTACTGCGTTCTCCAAGATGGTTEST: gi|76021492|gb|DT948662.1|DT948662
genomic: TGAAGTGCTTGATTCTAGTTTTTGCCTACCGATTGGCAAAGCTAAGgtatgttgtg ... ctttctgtagATAGAACGTGGGGGTAAAGATGTTACCATTACTGCGTTCTCCAAGATGGTT
EST: AGTTTTTGCCTACCGATTGGCAAAGCTAAG ATAGAACGTGGGGGTAAAGATGTTACCATTACTGCGTTCTCCAAGATGGTTEST: gi|6859967|gb|AW355961.1|AW355961
genomic: AGTTTTTGCCTACCGATTGGCAAAGCTAAGgtatgttgtg ... ctttctgtagATAGAACGTGGGGGTAAAGATGTTACCATTACTGCGTTCTCCAAGATGGTT
EST: CTGCTGAAGTGCTTGATTCTAGTTTTTGCCTACCGATTGGCAAAGCTAAG ATAGAACGTGGGGGTAAAGATGTTACCATTACTGCGTTCTCCAAGATGGTT
genomic: CTGCTGAAGTGCTTGATTCTAGTTTTTGCCTACCGATTGGCAAAGCTAAGgtatgttgtg ... ctttctgtagATAGAACGTGGGGGTAAAGATGTTACCATTACTGCGTTCTCCAAGATGGTT
tctggattatacttgatatcatctgcacttcactgtgggcctcatctttctgtagATAGAACGTGGGGGTAAAGATGTTACCATTACTGCGTTCTCCAAGATGGTTGGCTATGCTCTCCAG
acttgat putative branch site (score: 437)
cctcatctttctgt putative PPT
attatacttgatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttgtgtcttgggtgcatatgggtgtatgggaaggagattactttaggtaggactatttctataagtttaccttgggatggttttgagtggacttcctattgctttcaaaacggctctccatttccatttctggattatacttgatatcatctgcacttcactgtgggcctcatctttctgtagATAGAACGTGGGGGTAAAGATGTTACCATTACTGCGTTCTCCAAGATGGTTGGCTATGCTCTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG