1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...aagttttggtacctataacgtgccttagtctttatgatttgtatcaattatttctgtattattgcttgaatgtttattctcactaagtatattcatcaagGTACGATCTAATTATTTCACACAAGGAAGAGCTTGCACTTCTCATGACACTGGAGCAGGGGAAACCTATGAAAGAAGCCCTTGGTGAG
species | Zea mays |
transcript | GRMZM2G128114_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTGGAGTAAACTCACTGCAAGTGAGAGAGGCAAGGCACTAAGAAAATG GTACGATCTAATTATTTCACACAAGGAAGAGCTTGCACTTCTCATGACACTEST: gi|211509962|gb|FL438235.1|FL438235
genomic: CTTGGAGTAAACTCACTGCAAGTGAGAGAGGCAAGGCACTAAGAAAATGgtagtttcta ... attcatcaagGTACGATCTAATTATTTCACACAAGGAAGAGCTTGCACTTCTCATGACACT
EST: CTTGGAGTAAACTCACTGCAAGTGAGAGAGGCAAGGCACTAAGAAAATG GTACGATCTAATTATTTCACACAAGGAAGAGCTTGCACTTCTCATGACACTEST: gi|67040351|gb|CO466606.1|CO466606
genomic: CTTGGAGTAAACTCACTGCAAGTGAGAGAGGCAAGGCACTAAGAAAATGgtagtttcta ... attcatcaagGTACGATCTAATTATTTCACACAAGGAAGAGCTTGCACTTCTCATGACACT
EST: CTTGGAGTAAACTCACTGCAAGTGAGAGAGGCAAGGCACTAAGAAAATG GTACGATCTAATTATTTCACACAAGGAAGAGCTTGCACTTCTCATGACACT
genomic: CTTGGAGTAAACTCACTGCAAGTGAGAGAGGCAAGGCACTAAGAAAATGgtagtttcta ... attcatcaagGTACGATCTAATTATTTCACACAAGGAAGAGCTTGCACTTCTCATGACACT
aattatttctgtattattgcttgaatgtttattctcactaagtatattcatcaagGTACGATCTAATTATTTCACACAAGGAAGAGCTTGCACTTCTCATGACACTGGAGCAGGGGAAACCTATGAAAGAAGCCCTTGGTGAG
ttctcac putative branch site (score: 2)
aatgtttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagttttggtacctataacgtgccttagtctttatgatttgtatcaattatttctgtattattgcttgaatgtttattctcactaagtatattcatcaagGTACGATCTAATTATTTCACACAAGGAAGAGCTTGCACTTCTCATGACACTGGAGCAGGGGAAACCTATGAAAGAAGCCCTTGGTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC