1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...caaagcaagagtaattcatctctatatttgtttttttaatgtagttggttcttatttgtaactctccactttgtatgttctaatcctttccttctcgtagCTTGGAGTAAACTCACTGCAAGTGAGAGAGGCAAGGCACTAAGAAAATG
species | Zea mays |
transcript | GRMZM2G128114_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAGCAGAGAAACATCTGATGCTATTGCTTCTGCTCACAGTACATTCTATT CTTGGAGTAAACTCACTGCAAGTGAGAGAGGCAAGGCACTAAGAAAATGEST: gi|211509962|gb|FL438235.1|FL438235
genomic: CAGCAGAGAAACATCTGATGCTATTGCTTCTGCTCACAGTACATTCTATTgtaagtcaaa ... cttctcgtagCTTGGAGTAAACTCACTGCAAGTGAGAGAGGCAAGGCACTAAGAAAATG
EST: CAGCAGAGAAACATCTGATGCTATTGCTTCTGCTCACAGTACATTCTATT CTTGGAGTAAACTCACTGCAAGTGAGAGAGGCAAGGCACTAAGAAAATGEST: gi|78107121|gb|DV525539.1|DV525539
genomic: CAGCAGAGAAACATCTGATGCTATTGCTTCTGCTCACAGTACATTCTATTgtaagtcaaa ... cttctcgtagCTTGGAGTAAACTCACTGCAAGTGAGAGAGGCAAGGCACTAAGAAAATG
EST: CAGCAGAGAAACATCTGATGCTATTGCTTCTGCTCACAGTACATTCTATT CTTGGAGTAAACTCACTGCAAGTGAGAGAGGCAAGGCACTAAGAAAATGEST: gi|149087724|gb|EE177069.2|EE177069
genomic: CAGCAGAGAAACATCTGATGCTATTGCTTCTGCTCACAGTACATTCTATTgtaagtcaaa ... cttctcgtagCTTGGAGTAAACTCACTGCAAGTGAGAGAGGCAAGGCACTAAGAAAATG
EST: CAGCAGAGAAACATCTGATGCTATTGCTTCTGCTCACAGTACATTCTATT CTTGGAGTAAACTCACTGCAAGTGAGAGAGGCAAGGCACTAAGAAAATGEST: gi|67040351|gb|CO466606.1|CO466606
genomic: CAGCAGAGAAACATCTGATGCTATTGCTTCTGCTCACAGTACATTCTATTgtaagtcaaa ... cttctcgtagCTTGGAGTAAACTCACTGCAAGTGAGAGAGGCAAGGCACTAAGAAAATG
EST: CAGCAGAGAAACATCTGATGCTATTGCTTCTGCTCACAGTACATTCTATT CTTGGAGTAAACTCACTGCAAGTGAGAGAGGCAAGGCACTAAGAAAATG
genomic: CAGCAGAGAAACATCTGATGCTATTGCTTCTGCTCACAGTACATTCTATTgtaagtcaaa ... cttctcgtagCTTGGAGTAAACTCACTGCAAGTGAGAGAGGCAAGGCACTAAGAAAATG
tggttcttatttgtaactctccactttgtatgttctaatcctttccttctcgtagCTTGGAGTAAACTCACTGCAAGTGAGAGAGGCAAGGCACTAAGAAAATG
ttctaat putative branch site (score: 2)
tgttctaatcctttcc CT-rich tract
ttatttgtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaagcaagagtaattcatctctatatttgtttttttaatgtagttggttcttatttgtaactctccactttgtatgttctaatcctttccttctcgtagCTTGGAGTAAACTCACTGCAAGTGAGAGAGGCAAGGCACTAAGAAAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
caaagcaa
- - - - - - - - - - - - - - tgttttt
- - - - - - - - - - - - - - - - - - - - - - -tggttct