1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttcataaccgaatagtccaagtgttttactggtttctttgatgtagagttcattgtcttcatataccgattatttgtttcagaatcacgaaagttaacagGGACGAAGTTCTCTCGAAGGCAGAAAATGATCTTGCTGCAGTTGTTAATCAATACATTGCAAAACTAGTAAAAGAATTACAAGGAACTGACTTCTGGAAA
species | Zea mays |
transcript | GRMZM2G128080_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGTCGGGATATTACAATGAACAGCAAAAAGGTCATCTTTCAGGTCCACAG GGACGAAGTTCTCTCGAAGGCAGAAAATGATCTTGCTGCAGTTGTTAATCAEST: gi|211191936|gb|FL162062.1|FL162062
genomic: AGTCGGGATATTACAATGAACAGCAAAAAGGTCATCTTTCAGGTCCACAGgtaagcagtg ... aagttaacagGGACGAAGTTCTCTCGAAGGCAGAAAATGATCTTGCTGCAGTTGTTAATCA
EST: AGTCGGGATATTACAATGAACAGCAAAAAGGTCATCTTTCAGGTCCACAG GGACGAAGTTCTCTCGAAGGCAGAAAATGATCTTGCTGCAGTTGTTAATCAEST: gi|211191938|gb|FL162064.1|FL162064
genomic: AGTCGGGATATTACAATGAACAGCAAAAAGGTCATCTTTCAGGTCCACAGgtaagcagtg ... aagttaacagGGACGAAGTTCTCTCGAAGGCAGAAAATGATCTTGCTGCAGTTGTTAATCA
EST: AGTCGGGATATTACAATGAACAGCAAAAAGGTCATCTTTCAGGTCCACAC GGACGAAGTTCTCTCGAAGGCAGAAAATGATCTTGCTGCAGTTGTTAATCAEST: gi|211191935|gb|FL162061.1|FL162061
genomic: AGTCGGGATATTACAATGAACAGCAAAAAGGTCATCTTTCAGGTCCACAGgtaagcagtg ... aagttaacagGGACGAAGTTCTCTCGAAGGCAGAAAATGATCTTGCTGCAGTTGTTAATCA
EST: AGTCGGGATATTACAATGAACAGCAAAAAGGTCATCTTTCAGGTCCACAG GGACGAAGTTCTCTCGAAGGCAGAAAATGATCTTGCTGCAGTTGTTAATCA
genomic: AGTCGGGATATTACAATGAACAGCAAAAAGGTCATCTTTCAGGTCCACAGgtaagcagtg ... aagttaacagGGACGAAGTTCTCTCGAAGGCAGAAAATGATCTTGCTGCAGTTGTTAATCA
gagttcattgtcttcatataccgattatttgtttcagaatcacgaaagttaacagGGACGAAGTTCTCTCGAAGGCAGAAAATGATCTTGCTGCAGTTGTTAATCAATACATTGCAAAACTAGTAAAAGAATTACAAGGAACTGACTTCTGGAAA
attatttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcataaccgaatagtccaagtgttttactggtttctttgatgtagagttcattgtcttcatataccgattatttgtttcagaatcacgaaagttaacagGGACGAAGTTCTCTCGAAGGCAGAAAATGATCTTGCTGCAGTTGTTAATCAATACATTGCAAAACTAGTAAAAGAATTACAAGGAACTGACTTCTGGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - ccaagtg
- - - - - - - - - - - - - tactggt
- - - - - - - - - - - - - - - - - - tttgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttca