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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taaaacaaaaaaaaacaaaagattactagtagtagaaagaagataggaagttggtggtgatatggaggagtaataatcttgtgaatgtgatgttgaccagTGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGTCTGGCCTTCAACTGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGA

Basic information

species Zea mays
transcript GRMZM2G127949_T07
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G127949_T07 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g63770.1 (Oryza sativa), 3'ss of exon 3
taaaacaaaaaaaaacaaaagattactagtagtagaaagaagataggaagt-tggtggtgatatggaggagt--aataatcttgtgaatgtgatgttgaccagTGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGTCTGGCCTTCAACTGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGA
   ||  |   |  ||   | |||     ||     |  |  ||||  | | |  |    |   ||   | |   | || |||||||   |||       |||||||||||||||||||| ||||| |||||||| |||||||||||||| || || |||||||||||||||||||| || ||||||||||||||||||||||
---aatcacttattactgcaaattttgcataactacacaactatagttactatactaacaactggggctaatgggagaagcttgtgacgttgactggtggcagTGGTTCGAGGTGCTGGATGGGCTACTGGGCCCGTACTGGAAGGCGGCCGGACTCGCCTTCAACTGCACGTTCCTCCTCTTCGGCTCCGTCATCCAGCTGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37416255|gb|CF645778.1|CF645778
EST:     GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAG                         TGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
genomic: GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAGgtatggctct ... tgttgaccagTGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
EST: gi|71439891|gb|DR820941.1|DR820941
EST:     GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAG                         TGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
genomic: GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAGgtatggctct ... tgttgaccagTGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
EST: gi|149106248|gb|EE291943.2|EE291943
EST:     GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAG                         TGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
genomic: GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAGgtatggctct ... tgttgaccagTGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
EST: gi|89247965|gb|DY619751.1|DY619751
EST:     GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAG                         TGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
genomic: GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAGgtatggctct ... tgttgaccagTGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
EST: gi|50333849|gb|CO528975.1|CO528975
EST:     GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAG                         TGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
genomic: GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAGgtatggctct ... tgttgaccagTGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
EST: gi|88755867|gb|DY540008.1|DY540008
EST:     GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAG                         TGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
genomic: GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAGgtatggctct ... tgttgaccagTGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
EST: gi|71773472|gb|DR971374.1|DR971374
EST:     GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAG                         TGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGAAAGGCGGCGGGT
genomic: GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAGgtatggctct ... tgttgaccagTGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
EST: gi|74238272|gb|DT646186.1|DT646186
EST:     GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAG                         TGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
genomic: GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAGgtatggctct ... tgttgaccagTGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
EST: gi|93016578|gb|EB642098.1|EB642098
EST:     GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAG                         TGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
genomic: GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAGgtatggctct ... tgttgaccagTGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
EST: gi|148993471|gb|EE033790.2|EE033790
EST:     GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAG                         TGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
genomic: GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAGgtatggctct ... tgttgaccagTGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
EST: gi|76283871|gb|DV023439.1|DV023439
EST:     GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAG                         TGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
genomic: GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAGgtatggctct ... tgttgaccagTGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
EST: gi|149088802|gb|EE177929.2|EE177929
EST:     GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAG                         TGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCCACTGGAAGGCGGCGGGT
genomic: GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAGgtatggctct ... tgttgaccagTGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
EST: gi|149000738|gb|EE037956.2|EE037956
EST:     GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAG                         TGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
genomic: GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAGgtatggctct ... tgttgaccagTGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
EST: gi|91877700|gb|EB407657.1|EB407657
EST:     GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAG                         TGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
genomic: GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAGgtatggctct ... tgttgaccagTGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
EST: gi|148940213|gb|EC884981.2|EC884981
EST:     GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAG                         TGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
genomic: GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAGgtatggctct ... tgttgaccagTGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
EST: gi|71431743|gb|DR812793.1|DR812793
EST:     GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAG                         TGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
genomic: GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAGgtatggctct ... tgttgaccagTGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
EST: gi|148991111|gb|EE032561.2|EE032561
EST:     GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAG                         TGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
genomic: GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAGgtatggctct ... tgttgaccagTGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
EST: gi|50333523|gb|CO528649.1|CO528649
EST:     GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAG                         TGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
genomic: GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAGgtatggctct ... tgttgaccagTGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
EST: gi|93017325|gb|EB642845.1|EB642845
EST:     GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAG                         TGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
genomic: GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAGgtatggctct ... tgttgaccagTGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
EST: gi|71426467|gb|DR807517.1|DR807517
EST:     GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAG                         TGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
genomic: GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAGgtatggctct ... tgttgaccagTGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
EST: gi|50323790|gb|CO518916.1|CO518916
EST:     GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAG                         TGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
genomic: GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAGgtatggctct ... tgttgaccagTGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
EST: gi|50325029|gb|CO520155.1|CO520155
EST:     GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAG                         TGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
genomic: GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAGgtatggctct ... tgttgaccagTGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
EST: gi|71766076|gb|DR964013.1|DR964013
EST:     GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAG                         TGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
genomic: GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAGgtatggctct ... tgttgaccagTGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
EST: gi|148960340|gb|EE153599.2|EE153599
EST:     GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAG                         TGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGGAGGCGGCGGGT
genomic: GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAGgtatggctct ... tgttgaccagTGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
EST: gi|101383844|gb|EB813977.1|EB813977
EST:     GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAG                         TGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
genomic: GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAGgtatggctct ... tgttgaccagTGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
EST: gi|71770227|gb|DR968164.1|DR968164
EST:     GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAG                         TGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
genomic: GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAGgtatggctct ... tgttgaccagTGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
EST: gi|148960968|gb|EE011664.2|EE011664
EST:     GCTCCCGCCAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAG                         TGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTTGGA-GGCGGCGG
genomic: GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAGgtatggctct ... tgttgaccagTGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACT-GGAAGGCGGCGG
EST: gi|93013574|gb|EB639094.1|EB639094
EST:     GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAG                         TGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
genomic: GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAGgtatggctct ... tgttgaccagTGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
EST: gi|149065677|gb|EE286799.2|EE286799
EST:     GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAG                         TGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
genomic: GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAGgtatggctct ... tgttgaccagTGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
EST: gi|71433856|gb|DR814906.1|DR814906
EST:     GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAG                         TGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
genomic: GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAGgtatggctct ... tgttgaccagTGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
EST: gi|149112165|gb|EE295087.2|EE295087
EST:     GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAG                         TGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
genomic: GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAGgtatggctct ... tgttgaccagTGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
EST: gi|19351820|gb|BM896352.1|BM896352
EST:     GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAG                         TGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
genomic: GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAGgtatggctct ... tgttgaccagTGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
EST: gi|71439386|gb|DR820436.1|DR820436
EST:     GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAG                         TGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
genomic: GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAGgtatggctct ... tgttgaccagTGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
EST: gi|71312081|gb|DR792563.1|DR792563
EST:     GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAG                         TGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
genomic: GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAGgtatggctct ... tgttgaccagTGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
EST: gi|149077991|gb|EE166727.2|EE166727
EST:     GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAG                         TGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
genomic: GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAGgtatggctct ... tgttgaccagTGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
EST: gi|149084117|gb|EE173519.2|EE173519
EST:     GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAG                         TGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
genomic: GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAGgtatggctct ... tgttgaccagTGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
EST: gi|78091637|gb|DV520011.1|DV520011
EST:     GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAG                         TGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
genomic: GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAGgtatggctct ... tgttgaccagTGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
EST: gi|19058007|gb|BM736674.1|BM736674
EST:     GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAG                         TGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
genomic: GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAGgtatggctct ... tgttgaccagTGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
EST: gi|74245666|gb|DT653580.1|DT653580
EST:     GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAG                         TGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
genomic: GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAGgtatggctct ... tgttgaccagTGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
EST: gi|89758211|gb|DY687480.1|DY687480
EST:     GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAG                         TAGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
genomic: GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAGgtatggctct ... tgttgaccagTGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
EST: gi|148981006|gb|EE027369.2|EE027369
EST:     GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAG                         TGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
genomic: GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAGgtatggctct ... tgttgaccagTGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
EST: gi|149012077|gb|EE042497.2|EE042497
EST:     GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAG                         TGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
genomic: GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAGgtatggctct ... tgttgaccagTGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
EST: gi|148967257|gb|EE018458.2|EE018458
EST:     GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAG                         TGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
genomic: GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAGgtatggctct ... tgttgaccagTGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
EST: gi|88757663|gb|DY541804.1|DY541804
EST:     GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAG                         TGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
genomic: GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAGgtatggctct ... tgttgaccagTGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
EST: gi|148970317|gb|EE021187.2|EE021187
EST:     GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAG                         TGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT
genomic: GCTCCCGCAAGGAGAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAGgtatggctct ... tgttgaccagTGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggaagttggtggtgatatggaggagtaataatcttgtgaatgtgatgttgaccagTGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGTCTGGCCTTCAACTGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGA
                         taataatctt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
taaaacaaaaaaaaacaaaagattactagtagtagaaagaagataggaagttggtggtgatatggaggagtaataatcttgtgaatgtgatgttgaccagTGGTTCGAGGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGTCTGGCCTTCAACTGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA