Sequence
atgc intronic sequence ATGC exonic sequence...taatagtctgagtaaactgggtcaggcccattacagaggggtgagatagtaattacacggggaaatccccaaaccctaatcgggtattctaacactttagATGCATGATGATGATTTTAGGCAAGACCGATATGGTGTTGTCAGTGGATTAAGAGATGGTTGTTACTCAGATGATATGACACTCGCTGCAATAGCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G127754_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g67870.1 (Oryza sativa), 3'ss of exon 8
taatagtctgagtaaactgggtcaggcccattacagaggggtgagatagtaattacacggg-----gaaatccccaaaccctaat-cgggtattctaacactttagATGCATGATGATGATTTTAGGCAAGACCGATATGGTGTTGTCAGTGGATTAAGAGATGGTTGTTACTCAGATGATATGACACTCGCTGCAATAGCAG---
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-----------gtatgttgaccctctcccccaaaaggggtattaccttgtt-tcacataagttttagatttgctgttgtgctgttgctaagacaagtatattttagATGCATGCTGATGATTTTCGGCAAGACCTATATGGCGTCGTCAGTGGATTAAGAGATGGTGGTTACTCAGATGATATGACCCTTGCTGCAATAGCCGGTA
upper sequence: GRMZM2G127754_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA08G03760.1 (Glycine max), 3'ss of exon 8
taatagtctgagtaaactgggtcaggcccattacagaggggtgagatagtaattacacggggaaatccccaaaccctaatcgggtattctaacactttagATGCATGATGATGATTTTAGGCAAGACCGATATGGTGTTGTCAGTGGATTAAGAGATGGTTGTTACTCAGATGATATGACACTCGCTGCAATAGCAG
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----------------gtagcttttacctttttttt-----ttccttgattgatgctttgaagaaaacttatgttctaacaatttagTTT--TTCTTCAGATGCATGCTGATGACTTTAGGCAAGATCGATATGGTGTAGTCTCCGGACTTAAAGATGGTGGATATTCGGATGATATGACTCTTGCAGC--------
upper sequence: GRMZM2G127754_T01 (Zea mays), 3'ss of exon 3
lower sequence: AT2G19880.1 (Arabidopsis thaliana), 3'ss of exon 8
taatagtctgagtaaactgggtcaggcccattacagaggggtgagatagtaattacacggggaaatccccaaaccctaatcgggtattctaacactt-tagATGCATGATGATGATTTTAGGCAAGACCGATATGGTGTTGTCAGTGGATTAAGAGATGGTTGTTACTCAGATGATATGACACTCGCTGCAATAGCAG
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-----gtatgtatataacatattacatggtatatagaatgtttgttttgtattccct----gctacagctaattttggtttatgtttccaactatttgtagATGCATGCTGATGATTTCAGACAAGATCGGTACGGTGTTGTCTCTGGCTTACGTGATGGTGGATATTCAGATGATATGACACTTGCCTCTCTAGCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atagtaattacacggggaaatccccaaaccctaatcgggtattctaacactttagATGCATGATGATGATTTTAGGCAAGACCGATATGGTGTTGTCAGTGGATTAAGAGATGGTTGTTACTCAGATGATATGACACTCGCTGCAATAGCAG
ttctaac putative branch site (score: 1)
tattctaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
taatagtctgagtaaactgggtcaggcccattacagaggggtgagatagtaattacacggggaaatccccaaaccctaatcgggtattctaacactttagATGCATGATGATGATTTTAGGCAAGACCGATATGGTGTTGTCAGTGGATTAAGAGATGGTTGTTACTCAGATGATATGACACTCGCTGCAATAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - caggccc