Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acaaagaactatattttggtacggagggagtaatatattgcttcacaacaatgatatattctataatctatatttctatgttccccctttttccttgcagTACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAATATATTGCACCGCGATCTGAAGCCGAGCAATTTGTTCCTAAATGCAAATT

Basic information

species Zea mays
transcript GRMZM2G127141_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G127141_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os10g38950.1 (Oryza sativa), 3'ss of exon 3
-------------------------------------------------------acaaagaact----atattttggtacggagggagtaatatattg-cttcacaacaatgatat-----------attctataatctatat--ttctatgttccc--------cctttttccttgcagTACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAATATATTGCACCGCGATCTGAAGCCGAGCAATTTGTTCCTAAATGCAAATT
                                                       ||| |||  |      |  ||| | |   ||  |  |||| ||  |||||    |   ||||           ||||| |  | ||| |  ||  ||  || |          |||| | |||||||||||| |||| |||||| ||||||||||||||||||||||||| |||||| | |||||||| ||||||||||| |||||||||||||| ||||||||||
gtttgttgcttccagcttgtgctttgctgaaacattttgcttgcagaaaatctagacagagatttccatgcaccttgttcctttggtcgctatatgttttcttcatcctatccatatttcagcttaacattctcttgtttatctggtttaataatcacaagtgacatgttttgcattgcagTACTTCCTGTACCAGTTGCTACGAGGGCTAAAATATGTGCACTCGGCAAATGTCTTGCACCGTGATCTGAAGCCAAGCAATTTGTTCCTTAATGCAAATT

upper sequence: GRMZM2G127141_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA09G39190.1 (Glycine max), 3'ss of exon 3
acaaagaactatattttggtacggagggagtaatatattgcttcacaacaatgatatattctataatctatatttctatgttccccctttttccttgcagTACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAATATATTGCACCGCGATCTGAAGCCGAGCAATTTGTTCCTAAATGCAAATT
 |       | |   ||   || |        ||| |||| |  | |  |   |     | |||| | | |     |   |       |     || ||||| ||  ||||||||||||||||||| || |||||||| |||||||||||| |  ||||||| ||||| ||||| ||||| ||| | || ||||| || |
cctttttgttttgaattaaaacagtactcagcatacattggtctatataaccaaagatatttatactgtcttacagtgactgataagatacattttccagTATTTTCTGTATCAGTTGTTACGAGGACTCAAATATGTACACTCAGCAAATGTTCTGCACCGTGATCTAAAGCCTAGCAACTTGCTACTGAATGCCAACT

upper sequence: GRMZM2G127141_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA18G47140.1 (Glycine max), 3'ss of exon 3
acaaagaactatattttggtacggagggagtaatatattgcttcacaacaatgatatattctataatctatatttctatgttccccctttttccttgcagTACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAATATATTGCACCGCGATCTGAAGCCGAGCAATTTGTTCCTAAATGCAAATT-
 |       | |   ||   |  |      | ||| |||| || | |  |   |     | |||| | | |     |   |       |     || ||||| ||  | ||||||||| ||||||| || |||||||| |||||||||||| |  ||||||| ||||| ||||| ||||| ||| | || ||||| || | 
-ctttttgttttgaattaaaagagtactcatcatacattggtttatataaccaaagatatttatactgtctcacagtgactgataagatacattttccagtATTTTCTTTATCAGTTGCTACGAGGACTCAAATATGTACACTCAGCAAATGTTCTGCACCGTGATCTAAAGCCTAGCAACTTGCTACTGAATGCCAACTG

upper sequence: GRMZM2G127141_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA05G37480.1 (Glycine max), 3'ss of exon 3
-----acaaagaactatattttggtacggagggagtaatatattgcttcacaacaatgatatattctataatctatatttctatgttccccctttttccttgcagTACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAATATATTGCACCGCGATCTGAAGCCGAGCAATTTGTTCCTAAATGCAAATT
     ||||| |   |      |  |      |  |    |  ||||| | |  | |   | |||    |    || | | | ||      ||| |     |||||||||||| || ||| ||||||| ||| | |||||||||||||| || ||| | || ||||| || || ||||| || || ||  |  | |||||||| |
ctcacacaaaaactcaccccaagaaatattttgtttgtctttctgctttaaatgagtttgaaattaagcatggaatttatatttgaagaaacttgt-----gcagTACTTCTTATACCAGCTGTTACGGGGGTTGAAATATGTGCACTCGGCTAATGTTTTACACCGTGACCTTAAGCCCAGTAACTTACTAATGAATGCAAACT

upper sequence: GRMZM2G127141_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA16G03670.1 (Glycine max), 3'ss of exon 3
acaaagaactatattttggtacggagggagtaatatattgcttcacaacaatgatatattctataatcta--tatttctatgttccccctttttccttgcagTACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAATATATTGCACCGCGATCTGAAGCCGAGCAATTTGTTCCTAAATGCAAATT
    |    | |  | ||||    | ||  | |   | ||   || ||   | |||| |||| |  |  |   | |  || |  |    ||||| |   ||||| ||  ||||||| |||||||||||||| |||||||| || ||||||||| | |||||||| ||||| ||||| || |||||| |  | ||||| ||||
-tgcatggatttcatgtggtctccaaggcttcaggcactgtagcataattcttatattttctttcttgcagccactcataagaactttttttttgccc-cagTATTTTCTGTATCAATTGTTACGAGGGCTCAAATATGTACATTCAGCAAATGTTTTGCACCGAGATCTAAAGCCTAGTAATTTGCTATTGAATGCCAATT

upper sequence: GRMZM2G127141_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA01G43100.1 (Glycine max), 3'ss of exon 3
----------------------------------------------------------------------------acaaagaactatattttggtacggagggagtaatatattgcttcacaacaatgatatattctataatctatatttctat-gttccccctttttccttg--cagTACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAATATATTGCACCGCGATCTGAAGCCGAGCAATTTGTTCCTAAATGCAAATT
                                                                            | | |||   || | ||  | |    || ||  | |   | ||        |  | | || |  |||  |  ||  ||| | |    | |    ||||  |||||||| || |||||| ||||||| ||||| ||||||||||| || || ||||| |||||||| ||||| ||||| || |||||| | || ||| |||| |
gtttccttctattcatattctatacagaaaaaaatctttcaagcgattaaatcgacacatgtattttaaatatatgaaatagattcat-tcttattgcatgaggggtgttgttaagttttgatttgttcttttcttttgaaattaagcttggtattgatgtttcgtgaaacttgtgcagTACTTTTTATATCAGCTGTTACGGGGGCTGAAATATGTGCATTCTGCTAATATCTTGCACCGTGATCTTAAGCCCAGTAATTTGCTTCTCAATTCAAACT

upper sequence: GRMZM2G127141_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA11G02420.1 (Glycine max), 3'ss of exon 3
--------------------------------------------------------------------acaaagaactatattttggtacggagggagtaatatattgcttcacaacaatgatatattctataatctata-----tttctatgttccccctttttccttgcagTACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAATATATTGCACCGCGATCTGAAGCCGAGCAATTTGTTCCTAAATGCAAATT---------------
                                                                     || |  | |   | ||  | |  | ||  |  ||  |   ||   |    || | |  | |  ||  ||       | || ||||| |       |  | ||||||||| || |||||| ||||||| ||||| ||||||||||| || || ||||| |||||||| ||||| ||||| ||||||||| | || |||||||| |               
gtcaggtttccttctatttatattatttcgttttcagttttctattcatattctatacagttttgtattcagattattccttcttattgcataagggctgttaattaagttttgacttgtgcttttcttttgaaattaagcatggtatccatgtttcgtgaaacttgt-gcagtactttttatatcagCTGTTACGGGGGCTGAAATATGTGCATTCTGCTAATATCTTGCACCGTGATCTTAAGCCCAGCAATTTGCTTCTCAATGCAAACTGTGACCTTAAAATTG

upper sequence: GRMZM2G127141_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA08G02060.1 (Glycine max), 3'ss of exon 3
----acaaagaactatattttggtacggagggagtaatatattgcttcacaacaatgatatattctataatctatatttctatgttccccctttttccttgcagTACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAATATATTGCACCGCGATCTGAAGCCGAGCAATTTGTTCCTAAATGCAAATT
     || | |   |         |         |    |  |||||   |||   | |  |   ||     |  |||| ||| |        ||    ||||||||||||| || ||| ||||||| ||||| |||||||| ||||| || ||  | |||||||| || || ||||| || || ||  |  | |||||||| |
tcactcacaaattcaccccaaaaaatattttttttggcttgctgcttt-taactgagtttgaaattaagcattgaatttatatttgaagaaacttg---tgcagTACTTCTTATACCAGCTGTTACGGGGGCTTAAATATGTTCACTCGGCTAACGTTTTGCACCGTGACCTTAAGCCCAGTAACTTACTAATGAATGCAAACT

upper sequence: GRMZM2G127141_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA07G07270.1 (Glycine max), 3'ss of exon 3
acaaagaactatattttggtacggagggagtaatatattgcttcacaacaatgatatattctataatctatatttctatgttccccctttttccttgc---agTACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAATATATTGCACCGCGATCTGAAGCCGAGCAATTTGTTCCTAAATGCAAATT
   | | |||  || | |||    | ||  | |   | ||   || ||   | |||| |||| |  |  | |     ||     |  |||||  ||||   |||| ||  ||||||| |||||||||||||| |||||||| || ||||||||| | |||||||| ||||| ||||| || |||||| |  | ||||| ||||
--catggacttcatgt-ggtctttaaggcttcaggcactgtagcataattcttatattttctttcttacagacactcataagaactttttttttttgccccagTATTTTCTGTATCAATTGTTACGAGGGCTCAAATATGTACATTCAGCAAATGTTTTGCACCGTGATCTAAAGCCTAGTAATTTGCTATTGAATGCCAATT

upper sequence: GRMZM2G127141_T01 (Zea mays), 3'ss of exon 3
lower sequence: AT1G01560.1 (Arabidopsis thaliana), 3'ss of exon 3
---------------------------------acaaagaactatattttggtacggagggagtaat--atattgcttca---caacaatgatatattctataatctatatttctatgttccccctttttccttgcagTACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAATATATTGCACCGCGATCTGAAGCCGAGCAATTTGTTCCTAAATGCAAATT
                                  |||  | ||    ||| |  |  ||    ||||    ||   ||     | |     ||  | |      |  || | |     |      | | |  ||||||| |||| ||||||||||||| ||||| || || |||||||| ||||| ||| || |||| || ||| | || ||||| || ||| |||| |||||||| |
gtacgcattaacctctcctgtgcttcttatagctcaagtatcttctgtttaggtcaaagtttataatcagaatctttttggttcgaaggctatgaagttggggtttgatgtataaccataaattttatgtttttgcagTTCTTCCTGTATCAGTTGTTGCGAGGCCTCAAGTATGTGCATTCAGCCAATGTACTGCATCGTGATTTAAAACCGAGTAACTTGCTCCTGAATGCAAACT

upper sequence: GRMZM2G127141_T01 (Zea mays), 3'ss of exon 3
lower sequence: AT4G11330.1 (Arabidopsis thaliana), 3'ss of exon 3
acaaagaactatattttggtacggagggagtaatatattgcttcacaacaatgatatattctataatctatatttctatgttccccctttttccttgcagTACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAATATATTGCACCGCGATCTGAAGCCGAGCAATTTGTTCCTAAATGCAAATT
                  ||||||         |    |  || | | | ||| |  |||  || |    |  |||  | || |  |||||     ||||||||||||||||||| |  ||||||| || |||||| | || ||||||||| | || || || || || |||||||| |||||| |  | ||| | ||||
------------------gtacggtttttactctgctatatttgata-ctatggttgatttaatcacaagtgattcactttttcttctttt-----gcagTACTTCTTGTATCAGATTCTACGAGGACTCAAATATATTCATTCAGCAAATGTTTTACATCGTGACCTTAAGCCGAGTAATTTGCTTTTGAATTCGAATT

upper sequence: GRMZM2G127141_T01 (Zea mays), 3'ss of exon 3
lower sequence: AT4G01370.1 (Arabidopsis thaliana), 3'ss of exon 3
-------------------------------------------------------------------------------------acaaagaactatattttggtacggagggagtaata--tattgcttcacaacaatgatatattctataatctatatttcta--tgttccccctttttccttgcagTACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAATATATTGCACCGCGATCTGAAGCCGAGCAATTTGTTCCTAAATGCAAATT
                                                                                      |  |  | |||   ||| |||      ||| | |  || |            || |||  | |  | |     ||  ||  |  |  |  || |   |||||||  ||  ||||||||||||| || ||||| |||||||| || ||||| ||| ||||||| || ||| |||| || ||||||||| |||| ||||||||||
gtatgcatcaatctccatcttgcttatatctagcagctgaatcttctgtttctactttagaagcagctgttattgtgttagagcatctgatgagtattgcttgatactttataagtgagagctaataaggatttcgtttgttatgctttgaagttgtgtttagtaattagtttcgattatgttttgcagTTTTTTCTGTATCAGTTGTTGCGTGGGCTCAAATATGTTCATTCAGCTAATGTATTGCATCGAGATTTGAAACCTAGCAATTTGCTCCTGAATGCAAATT

upper sequence: GRMZM2G127141_T01 (Zea mays), 3'ss of exon 3
lower sequence: Vv15s0046g02010.t01 (Vitis vinifera), 3'ss of exon 3
acaaagaactatattttggtacggagggagtaatatattgcttcacaacaatga-tatattctataatctatatttctatgttccccctttt----tccttgcagTACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAATATATTGCACCGCGATCTGAAGCCGAGCAATTTGTTCCTAAATGCAAATT
    |       ||||| |||  | |  | ||  | ||   |||   |  ||   |||  |    ||   | || || |||   | ||  ||    ||  ||||||||||| |||||||| |||||||||| || |||||||| |||||||||||| | ||||| || ||| |||||||||| |||||| | || ||||||||||
----actgtgggatttttgta-agtgcaaatataacatcttttctgtatgatttctatgataccgaactgagatgtcaatgacactccaattctactctctgcagTACTTCCTGTATCAGGTGTTACGAGGACTTAAATATGTACACTCAGCAAATGTCTTGCATCGTGATTTGAAGCCGAGTAATTTGCTTCTGAATGCAAATT

upper sequence: GRMZM2G127141_T01 (Zea mays), 3'ss of exon 3
lower sequence: Vv02s0025g00270.t01 (Vitis vinifera), 3'ss of exon 3
--acaaagaactatatt-ttggtacggagggagtaatatattgcttcacaacaatgatatattctataatctatatttctatgttccccctttttccttgcagTACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAATATATTGCACCGCGATCTGAAGCCGAGCAATTTGTTCCTAAATGCAAATT
    |  || ||| |      |    | |  |   ||   ||   |||  ||  || | |    |  ||| | ||        |   |   |     |||||||||||  |||||||| |||| |||||  |||||||||| ||||| |||||| | |||||||| ||||| ||||| ||||||||| | || ||||||||||
aattactgagctaaaagaccagctttgggcaaccgattcttta--tcattactgtgctttgggttgaaat-tgtacaagagattgatcttctaggatttgcagTACTTTCTGTATCAGCTGTTGCGAGGATTAAAATATGTACACTCTGCAAATGTCTTGCACCGTGATCTAAAGCCCAGCAATTTGCTTCTGAATGCAAATT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67025602|gb|CO454351.1|CO454351
EST:     TCCATCAGATCGTACGCTCAAATCAGCCATTGACTGATGATCATTGCCAG                         TACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAAT
genomic: TCCATCAGATCGTACGCTCAAATCAGCCATTGACTGATGATCATTGCCAGgtctgttgct ... ttccttgcagTACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAAT
EST: gi|14202559|gb|BG836236.1|BG836236
EST:     TCCATCAGATCGTACGCTCAAATCAGCCATTGACTGATGATCATTGCCAG                         TACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTKCACTCAGCAAAT
genomic: TCCATCAGATCGTACGCTCAAATCAGCCATTGACTGATGATCATTGCCAGgtctgttgct ... ttccttgcagTACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAAT
EST: gi|148953292|gb|EE152779.2|EE152779
EST:     TCCATCAGATCGTACGCTCAAATCAGCCATTGACTGATGATCATTGCCAG                         TACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAAT
genomic: TCCATCAGATCGTACGCTCAAATCAGCCATTGACTGATGATCATTGCCAGgtctgttgct ... ttccttgcagTACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAAT
EST: gi|101387050|gb|EB815542.1|EB815542
EST:     TCCATCAGATCGTACGCTCAAATCAGCCATTGACTGATGATCATTGCCAG                         TACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAAT
genomic: TCCATCAGATCGTACGCTCAAATCAGCCATTGACTGATGATCATTGCCAGgtctgttgct ... ttccttgcagTACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAAT
EST: gi|78091137|gb|DV519511.1|DV519511
EST:     TCCATCAGATCGTACGCTCAAATCAGCCATTGACTGATGATCATTGCCAG                         TACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAAT
genomic: TCCATCAGATCGTACGCTCAAATCAGCCATTGACTGATGATCATTGCCAGgtctgttgct ... ttccttgcagTACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAAT
EST: gi|101388156|gb|EB816092.1|EB816092
EST:     TCCATCAGATCGTACGCTCAAATCAGCCATTGACTGATGATCATTGCCAG                         TACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAAT
genomic: TCCATCAGATCGTACGCTCAAATCAGCCATTGACTGATGATCATTGCCAGgtctgttgct ... ttccttgcagTACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAAT
EST: gi|149042024|gb|EE046998.2|EE046998
EST:     TCCATCAGATCGTACGCTCAAATCAGCCATTGACTGATGATCATTGCCAG                         TACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAAT
genomic: TCCATCAGATCGTACGCTCAAATCAGCCATTGACTGATGATCATTGCCAGgtctgttgct ... ttccttgcagTACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAAT
EST: gi|71771178|gb|DR969115.1|DR969115
EST:     TCCATCAGATCGTACGCTCAAATCAGCCATTGACTGATGATCATTGCCAG                         TACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAAT
genomic: TCCATCAGATCGTACGCTCAAATCAGCCATTGACTGATGATCATTGCCAGgtctgttgct ... ttccttgcagTACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAAT
EST: gi|148958758|gb|EC905037.2|EC905037
EST:     TCCATCAGATCGTACGCTCAAATCAGCCATTGACTGATGATCATTGCCAG                         TACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAAT
genomic: TCCATCAGATCGTACGCTCAAATCAGCCATTGACTGATGATCATTGCCAGgtctgttgct ... ttccttgcagTACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAAT
EST: gi|71428063|gb|DR809113.1|DR809113
EST:     TCCATCAGATCGTACGCTCAAATCAGCCATTGACTGATGATCATTGCCAG                         TACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAAT
genomic: TCCATCAGATCGTACGCTCAAATCAGCCATTGACTGATGATCATTGCCAGgtctgttgct ... ttccttgcagTACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAAT
EST: gi|93282255|gb|EB674519.1|EB674519
EST:     TCCATCAGATCGTACGCTCAAATCAGCCATTGACTGATGATCATTGCCAG                         TACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAAT
genomic: TCCATCAGATCGTACGCTCAAATCAGCCATTGACTGATGATCATTGCCAGgtctgttgct ... ttccttgcagTACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAAT
EST: gi|76917706|gb|DV166967.1|DV166967
EST:     TCCATCAGATCGTACGCTCAAATCAGCCATTGACTGATGATCATTGCCAG                         TACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAAT
genomic: TCCATCAGATCGTACGCTCAAATCAGCCATTGACTGATGATCATTGCCAGgtctgttgct ... ttccttgcagTACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAAT
EST: gi|91050576|gb|EB160994.1|EB160994
EST:     TCCATCAGATCGTACGCTCAAATCAGCCATTGACTGATGATCATTGCCAG                         TACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAAT
genomic: TCCATCAGATCGTACGCTCAAATCAGCCATTGACTGATGATCATTGCCAGgtctgttgct ... ttccttgcagTACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAAT
EST: gi|19351124|gb|BM895656.1|BM895656
EST:     TCCATCAGATCGTACGCTCAAATCAGCCATTGACTGATGATCATTGCCAG                         TACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAAT
genomic: TCCATCAGATCGTACGCTCAAATCAGCCATTGACTGATGATCATTGCCAGgtctgttgct ... ttccttgcagTACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAAT
EST: gi|148965635|gb|EE016484.2|EE016484
EST:     TCCATCAGATCGTACGCTCAAATCAGCCATTGACTGATGATCATTGCCAG                         TACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAAT
genomic: TCCATCAGATCGTACGCTCAAATCAGCCATTGACTGATGATCATTGCCAGgtctgttgct ... ttccttgcagTACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAAT
EST: gi|50338933|gb|CO534059.1|CO534059
EST:     TCCATCAGATCGTACGCTCAAATCAGCCATTGACTGATGATCATTGCCAG                         TACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAAT
genomic: TCCATCAGATCGTACGCTCAAATCAGCCATTGACTGATGATCATTGCCAGgtctgttgct ... ttccttgcagTACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAAT
EST: gi|31355601|gb|CD439958.1|CD439958
EST:     TCCATCAGATCGTACGCTCAAATCAGCCATTGACTGATGATCATTGCCAG                         TACTTCTTGTATCAGTTGCTACGAGGGCTAAAATATGTGCACTCAGCAAAT
genomic: TCCATCAGATCGTACGCTCAAATCAGCCATTGACTGATGATCATTGCCAGgtctgttgct ... ttccttgcagTACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAAT
EST: gi|149077095|gb|EE165753.2|EE165753
EST:     CCATCAGATCGTACGCTCAAATCAGCCCATTGACTGATGATCATTGCCAG                         TACTTCTTGTATCAGTTGTTACGAAGGGCTAAAATATGTGCACTCAGCAAA
genomic: CCATCAGATCGTACGCTCAAATCAGCC-ATTGACTGATGATCATTGCCAGgtctgttgct ... ttccttgcagTACTTCTTGTATCAGTTGTTACGA-GGGCTAAAATATGTGCACTCAGCAAA
EST: gi|76010906|gb|DT938076.1|DT938076
EST:     TCCATCAGATCGTACGCTCAAATCAGCCATTGACTGATGATCATTGCCAG                         TACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAAT
genomic: TCCATCAGATCGTACGCTCAAATCAGCCATTGACTGATGATCATTGCCAGgtctgttgct ... ttccttgcagTACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAAT
EST: gi|14202884|gb|BG836561.1|BG836561
EST:     TCCATCAGATCGTACGCTCAAATCAGCCATTGACTGATGATCATTGCCAG                         TACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAAT
genomic: TCCATCAGATCGTACGCTCAAATCAGCCATTGACTGATGATCATTGCCAGgtctgttgct ... ttccttgcagTACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAAT
EST: gi|148963531|gb|EE014552.2|EE014552
EST:     TCCATCAGATCGTACGCTCAAATCAGCCATTGACTGATGATCATTGCCAG                         TACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAAT
genomic: TCCATCAGATCGTACGCTCAAATCAGCCATTGACTGATGATCATTGCCAGgtctgttgct ... ttccttgcagTACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caacaatgatatattctataatctatatttctatgttccccctttttccttgcagTACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAATATATTGCACCGCGATCTGAAGCCGAGCAATTTGTTCCTAAATGCAAATT
                     tctatatttctatgtt  CT-rich tract
     atgatatattctataa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
acaaagaactatattttggtacggagggagtaatatattgcttcacaacaatgatatattctataatctatatttctatgttccccctttttccttgcagTACTTCTTGTATCAGTTGTTACGAGGGCTAAAATATGTGCACTCAGCAAATATATTGCACCGCGATCTGAAGCCGAGCAATTTGTTCCTAAATGCAAATT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
- aaagaac
- - - - - - -ttttggt
- - - - - - - - - - - - - - - - - - - -gcttcac