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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atacctgacctctgcctgtcatagttctgtaccgttttttgttctcatttgcaagaatcatttgtgttcttatccgtacaagttctgtatgctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGCTACCAGAGCAGAACCGGCTACCACAACATGTACAAGGAGTACCGCGACA

Basic information

species Zea mays
transcript GRMZM2G126928_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G126928_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g47660.1 (Oryza sativa), 3'ss of exon 3
atacctgacctctg---cctgtcatagttct-gtaccgttttttgttctcatttgca-agaatcatttgtgttcttatccgtacaagttctgtatgctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGCTACCAGAGCAGAACCGGCTACCACAACATGTACAAGGAGTACCGCGACA
 |   ||| | ||    |      || |||| |||   |||    || |    || | | |||  ||| |  |||   ||  |||| |||||    |  | ||||||||| ||||| ||||| || || ||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||
-tttttgaacactagatcacactttacttctagtatgatttcacatttttgcatggatataatactttcttctctacccctcacaatttctg----ccatgtcagATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGTTACCAGAGCAGAACCGGTTACCACAACATGTACAAGGAGTACCGTGACA

upper sequence: GRMZM2G126928_T01 (Zea mays), 3'ss of exon 3
lower sequence: EDP09481 (Chlamydomonas reinhardtii), 3'ss of exon 3
-------atacctgacctctgcctgtcatagttctgtaccgttttttgttctcatttgcaagaatcatttgtgttcttatccgtacaagttctgtatgctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGCTACCAGAGCAGAACCGGCTACCACAACATGTACAAGGAGTACCGCGACA
        | ||  | | ||| ||     |    ||   | |        |      ||   || |    |  | ||   || | |   ||  | | ||     |||||||| ||||| || || ||      ||||||||||||||||||| | |||||||||    | || |||   ||||||||||||||||||||||||||| 
gcgccgcgtgccacatc-ctgtctcctgcacgcatgacgcttccgcctgccctgcccgcgccaacccgccgcatcctcgcccctgc--cttacgcacgcg----cagATCTTCGAGCGCAAGCCCACCCTGGCCAAGAACTACGGCATCTGGGTTCGCTACCAGTCGCGCACGGGCGTGCACAACATGTACAAGGAGTACCGCGACG

upper sequence: GRMZM2G126928_T01 (Zea mays), 3'ss of exon 3
lower sequence: PP1S74_193V6.2 (Physcomitrella patens), 3'ss of exon 3
----atacctgacctctgcctgt-cata-gttctgtaccgttttttgttctc----atttgcaag---aatcatttgtgttcttatccgtacaagttctgtatgctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGCTACCAGAGCAGAACCGGCTACCACAACATGTACAAGGAGTACCGCGACA
    ||  |  |||  |  | ||  ||| | |||  |     |     | ||    | ||  |||   |  || ||||  |   ||  | |   |  | | | | |    ||||| ||||||    |||| || || ||||||||||| || |||||| |||| || |||||  | ||||| |||||||||||||||||||            
ttcaatttcgaaccgttctcagtgtatacgctcttgaaaccatcccaatgtcgggaaattataagcagagacaattgtcgttgaatatgaatctgaccag-

upper sequence: GRMZM2G126928_T01 (Zea mays), 3'ss of exon 3
lower sequence: PP1S56_243V6.3 (Physcomitrella patens), 3'ss of exon 3
atacctgacctctgcctgtcatagttctgtaccgttttttgttctca-tttgcaagaatcatttgtgttcttatccgtacaagttctgtatgctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGCTACCAGAGCAGAACCGGCTACCACAACATGTACAAGGAGTACCGCGACA
| |       | ||   |  | | |    || |  | ||  |  |    ||| |||   | ||     |  |||   || | ||  | | ||     |||||| ||||||    | || || || ||||||||||| || |||||| |||| || |||||| | || ||||||||||||||||||||||||||||| ||| 
agatacattgtttgagggcgaaattatgttaacaatgttaatcatgggcttgaaagtgacgttacgaattctattacta-atgtagtttttgaaccttcagATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGTTATCAGAGCCGGACTGGCTACCACAACATGTACAAGGAGTACCGTGACC

upper sequence: GRMZM2G126928_T01 (Zea mays), 3'ss of exon 3
lower sequence: PP1S74_193V6.1 (Physcomitrella patens), 3'ss of exon 3
--atacctgacctctgcctgtcatagttctgtaccgttttttgttctcatttgcaagaatcatttgtgttcttatccgtacaagttctgtatgctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGCTACCAGAGCAGAACCGGCTACCACAACATGTACAAGGAGTACCGCGACA
   | |      | | |   || |    |  | ||  | |  |       |    |||  || ||||  |   ||  | |   |  | | | | |    ||||| ||||||    |||| || || ||||||||||| || |||||| |||| || |||||  | ||||| ||||||||||||||||||||||| || ||| 
ccgttctcagtgtatacgc-tcttgaaaccatcccaatgtcgggaaattataagcagagacaattgtcgttgaatatgaatctgaccag-acgttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGTTATCAGAGTCGGACCGGGTACCACAACATGTACAAGGAGTATCGTGACC

upper sequence: GRMZM2G126928_T01 (Zea mays), 3'ss of exon 3
lower sequence: PP1S5_178V6.1 (Physcomitrella patens), 3'ss of exon 3
atacctgacctctgcc-tgtcatagttctgtaccgttttttgttctcatttgcaagaatcatttgtgttcttatccgtacaagttctgtatgctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGCTACCAGAGCAGAACCGGCTACCACAACATGTACAAGGAGTACCGCGACA
||  ||  | | |    ||  | | |  |  | ||      |     |   | ||  | |     |  || |     |  | |  |     | ||| |||||| ||||||    |||| || || |||||||| || || |||||| |||| || |||||  |||| ||||||||||||||||||||||||||||| ||| 
atcactagcatattttatgggagactcattcagcgacaaacggatgtagaggaaatgagc-cagataatcatgatactgaatgacccaatcgttgtttcagATTTTTGAGAAGTACCCTACCACTATCAAGAATTATGGTATCTGGGTGCGTTATCAGAGTCGAACTGGCTACCACAACATGTACAAGGAGTACCGTGACC

upper sequence: GRMZM2G126928_T01 (Zea mays), 3'ss of exon 3
lower sequence: PP1S184_111V6.1 (Physcomitrella patens), 3'ss of exon 3
atacctgacctctgcctgtcatagttctgtaccgttttttgttctcatttgc---aagaatcatttgtgttcttatccgtacaagttctgtatgctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGCTACCAGAGCAGAACCGGCTACCACAACATGTACAAGGAGTACCGCGACA
  |   | | |          | |   |  |  | |||| |      ||  |   | |  | ||     ||| |    | ||||    |||      |  |||||||| |||    | || || || |||||||||||||| || ||| |||| ||||||||| |||||||||||||||||||||||||||| ||||| ||  
--agtgggcgttaaggatatgtgggaatccagagattttggagtcggttcacttgatggtttatccaatttcattgttg-acaatgcttgttgcgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGGTACCAGAGCCGAACCGGCTACCACAACATGTACAAGGAATACCGTGATC

upper sequence: GRMZM2G126928_T01 (Zea mays), 3'ss of exon 3
lower sequence: PP1S101_218V6.1 (Physcomitrella patens), 3'ss of exon 3
atacctgacctctgcctgt-catagttctgtaccgttttttgt----tctcatttgcaagaatcatttgtgttcttatccgtacaagttctgtatgctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGCTACCAGAGCAGAACCGGCTACCACAACATGTACAAGGAGTACCGCGACA
      |  |||||   ||  ||||   || |    ||||  |     ||  ||     | |   |     |||  ||    |  |  ||||| |   |  |||||||||||||    | || || || |||||||||||||| |||||| |||| || || ||| |||||||||||||||| ||||||||||||||||| ||  
-----cggtctctgagggtatatagcaatgcagatattttgatacagcctacttcaggcggagtgtccaatttcgaatattaaggatgtctgtttcgcggttcagATCTTTGAGAAGTATCCAACCACCATCAAGAACTACGGGATCTGGGTGCGATATCAAAGCCGAACCGGCTACCACAATATGTACAAGGAGTACCGTGATC

upper sequence: GRMZM2G126928_T01 (Zea mays), 3'ss of exon 3
lower sequence: EFJ38689 (Selaginella moellendorffii), 3'ss of exon 3
atacctgacctctgcctgtcatagttctgtaccgttttttgttctcatttgcaagaatcatttgtgttcttatccgtacaagttctgta---tgctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGCTACCAGAGCAGAACCGGCTACCACAACATGTACAAGGAGTACCGCGACA
                            |||  ||| ||| || |  |||       |  | |     ||||   ||   |  | || |   |  ||   ||||| || |||   |||||||| || ||||||||||| ||||||||| || | ||||||||| | || || |||||||||||||||||||||||||||||||
----------------------------gtaaagttctttctttttcttt------cttttctcgagccttacaagtgagaactttggaacttcgtgacacagATTTTCGAGAAGAACCCGACCACGATCAAGAACTATGGCATCTGGGTGAGGTACCAGAGCCGGACGGGGTACCACAACATGTACAAGGAGTACCGCGACA

upper sequence: GRMZM2G126928_T01 (Zea mays), 3'ss of exon 3
lower sequence: EFJ31458 (Selaginella moellendorffii), 3'ss of exon 3
atacctgacctctgcctgtcatagttctgtaccgttttttgttctcatttgcaagaatcat-ttgtgttcttatccgtacaagttctgta---tgctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGCTACCAGAGCAGAACCGGCTACCACAACATGTACAAGGAGTACCGCGACA
                            |||  ||| ||| || |  |||         ||  | |   ||||   ||   |  | || |   |  ||   ||||| || |||   |||||||| || ||||||||||| ||||||||| || | ||||||||| | || || |||||||||||||||||||||||||||||||
----------------------------gtaaagttctttctttttctttctttcctcgatgctctagccttacaagtgagaactttggaacttcgtgacacagATTTTCGAGAAGAACCCGACCACGATCAAGAACTATGGCATCTGGGTGAGGTACCAGAGCCGGACGGGGTACCACAACATGTACAAGGAGTACCGCGACA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37375230|gb|CF624037.1|CF624037
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|16920669|gb|BM074770.1|BM074770
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|211102330|gb|FL044843.1|FL044843
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAATAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|32914647|gb|CF019459.1|CF019459
EST:     GTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGGCCATCAACGAG                         ATCTTTGAGCGTAACACGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: GTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT-GGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|37422722|gb|CF649076.1|CF649076
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACG
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACG
EST: gi|17931065|gb|BM268025.1|BM268025
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|28909868|gb|CB331139.1|CB331139
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|9794666|gb|BE552974.1|BE552974
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|211102334|gb|FL044847.1|FL044847
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|67014317|gb|CO443066.1|CO443066
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|15312848|gb|BI478418.1|BI478418
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|32912957|gb|CF017769.1|CF017769
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|18650144|gb|BM498963.1|BM498963
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|20301158|gb|BQ164101.1|BQ164101
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|32868158|gb|CF007840.1|CF007840
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|32862998|gb|CF002680.1|CF002680
EST:     GTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: GTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT-GGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|211099856|gb|FL044834.1|FL044834
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|32862779|gb|CF002461.1|CF002461
EST:     GTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: GTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT-GGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|211099848|gb|FL044826.1|FL044826
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|211099845|gb|FL044823.1|FL044823
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|18168162|gb|BM338002.1|BM338002
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|32851296|gb|CD990977.1|CD990977
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|211099846|gb|FL044824.1|FL044824
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|211102326|gb|FL044839.1|FL044839
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|74238642|gb|DT646556.1|DT646556
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|71310861|gb|DR791735.1|DR791735
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|32937131|gb|CF041950.1|CF041950
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|71433594|gb|DR814644.1|DR814644
EST:     CGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: CGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|37378143|gb|CF625736.1|CF625736
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|84980828|gb|DW531177.1|DW531177
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|40334660|gb|CK368730.1|CK368730
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|78021903|gb|DV490290.1|DV490290
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|211266386|gb|FL049660.1|FL049660
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|211102323|gb|FL044836.1|FL044836
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|32912986|gb|CF017798.1|CF017798
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|211097378|gb|FL044820.1|FL044820
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAGGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|44900234|gb|CK826779.1|CK826779
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|149111389|gb|EE294892.2|EE294892
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|40334718|gb|CK368788.1|CK368788
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|211099849|gb|FL044827.1|FL044827
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|211263958|gb|FL049655.1|FL049655
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|211099844|gb|FL044822.1|FL044822
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|5525311|gb|AI861150.1|AI861150
EST:     AGTTGAAGAAGGCTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|50323515|gb|CO518641.1|CO518641
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|32911376|gb|CF016188.1|CF016188
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|67011157|gb|CO439906.1|CO439906
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|32913608|gb|CF018420.1|CF018420
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|211102327|gb|FL044840.1|FL044840
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGG-CATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|32851416|gb|CD991097.1|CD991097
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|60351011|gb|DN217984.1|DN217984
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|50323514|gb|CO518640.1|CO518640
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|20301127|gb|BQ164070.1|BQ164070
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|91047926|gb|EB158344.1|EB158344
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|15632329|gb|BI679422.1|BI679422
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|60354543|gb|DN221516.1|DN221516
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|33094407|gb|CF054401.1|CF054401
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|84979961|gb|DW530310.1|DW530310
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATAAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|116826664|gb|EC870471.1|EC870471
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|32907762|gb|CF012575.1|CF012575
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTGACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|32913609|gb|CF018421.1|CF018421
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|18168944|gb|BM338784.1|BM338784
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|60396344|gb|DN229213.1|DN229213
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|19770443|gb|BQ035164.1|BQ035164
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|32859520|gb|CD999201.1|CD999201
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|9254698|gb|BE345166.1|BE345166
EST:     AGTTGAATAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|211263950|gb|FL049647.1|FL049647
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|32907763|gb|CF012576.1|CF012576
EST:     GTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGGCCATCAACGAG                         ATCTTTGAGCGTGACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: GTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGG-CCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|32919773|gb|CF024585.1|CF024585
EST:     GTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: GTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT-GGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|60351010|gb|DN217983.1|DN217983
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|211099853|gb|FL044831.1|FL044831
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTAC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTAC
EST: gi|76294102|gb|DV033670.1|DV033670
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|211099857|gb|FL044835.1|FL044835
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGC-ATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|71310863|gb|DR791736.1|DR791736
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|211099850|gb|FL044828.1|FL044828
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|211099847|gb|FL044825.1|FL044825
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|20300454|gb|BQ163397.1|BQ163397
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|84980956|gb|DW531305.1|DW531305
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
EST: gi|28986778|gb|CB351305.1|CB351305
EST:     AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG                         ATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC
genomic: AGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 954

GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGCTACCAGAGCAGAACCGGCTACCACAACATGTACAAGGAGTACCGCGACA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 912

GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGCTACCAGAGCAGAACCGGCTACCACAACATGTACAAGGAGTACCGCGACA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 757

GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGCTACCAGAGCAGAACCGGCTACCACAACATGTACAAGGAGTACCGCGACA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 698

GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgt ... gctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGCTACCAGAGCAGAACCGGCTACCACAACATGTACAAGGAGTACCGCGACA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catttgcaagaatcatttgtgttcttatccgtacaagttctgtatgctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGCTACCAGAGCAGAACCGGCTACCACAACATGTACAAGGAGTACCGCGACA
          aatcattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atacctgacctctgcctgtcatagttctgtaccgttttttgttctcatttgcaagaatcatttgtgttcttatccgtacaagttctgtatgctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGCTACCAGAGCAGAACCGGCTACCACAACATGTACAAGGAGTACCGCGACA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
atacctg
- - - - - - tgcctgt
- - - - - - - - - - - - - ctgtacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtgtt