1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatggcctgcactgcttgcttgcttgcttactgccgatgcaactgtcgtcgccacgcttctctaatctaactcactgtcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCG
species | Zea mays |
transcript | GRMZM2G126900_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGEST: gi|211533467|gb|FL294715.1|FL294715
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG ACCTGNGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGEST: gi|211533468|gb|FL294716.1|FL294716
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG ACCTGNGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGEST: gi|67014192|gb|CO442941.1|CO442941
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGEST: gi|78084506|gb|DV512899.1|DV512899
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGEST: gi|88752150|gb|DY536291.1|DY536291
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGEST: gi|76289997|gb|DV029565.1|DV029565
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGEST: gi|78119916|gb|DV538300.1|DV538300
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGEST: gi|149042044|gb|EE047019.2|EE047019
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGEST: gi|148960892|gb|EE011574.2|EE011574
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGEST: gi|15554177|gb|BI644175.1|BI644175
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: CCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG ACCTGNGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGEST: gi|211533473|gb|FL294721.1|FL294721
genomic: CCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGEST: gi|211530472|gb|FL294712.1|FL294712
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGEST: gi|93284184|gb|EB676448.1|EB676448
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGEST: gi|78112469|gb|DV530863.1|DV530863
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGEST: gi|60342265|gb|DN209238.1|DN209238
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGEST: gi|93016474|gb|EB641994.1|EB641994
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGEST: gi|78076468|gb|DV504902.1|DV504902
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGEST: gi|148941676|gb|EC886623.2|EC886623
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGEST: gi|40303359|gb|CK347746.1|CK347746
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGEST: gi|101386278|gb|EB815159.1|EB815159
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGEST: gi|67041064|gb|CO467319.1|CO467319
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGEST: gi|149010866|gb|EE042255.2|EE042255
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGEST: gi|78088525|gb|DV516918.1|DV516918
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGEST: gi|76923453|gb|DV169495.1|DV169495
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGEST: gi|154130490|gb|EC872226.2|EC872226
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGEST: gi|149100878|gb|EE186973.2|EE186973
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGEST: gi|71325953|gb|DR799659.1|DR799659
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGEST: gi|60396286|gb|DN229155.1|DN229155
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGEST: gi|93281928|gb|EB674192.1|EB674192
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG ACCTGNGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGEST: gi|211530469|gb|FL294709.1|FL294709
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG ACCTGGGCAAGGTGCTGCTGCEST: gi|78114314|gb|DV532703.1|DV532703
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGC
EST: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGEST: gi|148942392|gb|EC887411.2|EC887411
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
gccgatgcaactgtcgtcgccacgcttctctaatctaactcactgtcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCG
aactcac putative branch site (score: 2)
tcattttc putative PPT
taatctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggcctgcactgcttgcttgcttgcttactgccgatgcaactgtcgtcgccacgcttctctaatctaactcactgtcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT