1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gcaagccgtttcgcattcaccgttgcgcttgcgccccgccattggtgtatttgtaccgcgctctcgtttcacacgcgcgtttcatgcggtatgggcagCTTGACCGGGTGTCCAGCCTGACGTCCAAGTACCTGGGGCGGCCCATCACGCAGCTGCCGCCGGCGCAGGCGGCGCTGTCCATGTCGTCGCTGGACCTGT
species | Zea mays |
transcript | GRMZM2G126646_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACTTCGACGAGCAGAAGCTGCGCATGGAGAACGCGCGACTCAAAGAAGAG CTTGACCGGGTGTCCAGCCTGACGTCCAAGTACCTGGGGCGGCCCATCACGEST: gi|149077902|gb|EE166630.2|EE166630
genomic: ACTTCGACGAGCAGAAGCTGCGCATGGAGAACGCGCGACTCAAAGAAGAGgcaagccgtt ... gtatgggcagCTTGACCGGGTGTCCAGCCTGACGTCCAAGTACCTGGGGCGGCCCATCACG
EST: ACTTCGACGAGCAGAAGCTGCGCATGGAGAACGCGCGACTCAAAGAAGAG CTTGACCGGGTGTCCAGCCTGACGTCCAAGTACCTGGGGCGGCCCATCACG
genomic: ACTTCGACGAGCAGAAGCTGCGCATGGAGAACGCGCGACTCAAAGAAGAGgcaagccgtt ... gtatgggcagCTTGACCGGGTGTCCAGCCTGACGTCCAAGTACCTGGGGCGGCCCATCACG
ggtgtatttgtaccgcgctctcgtttcacacgcgcgtttcatgcggtatgggcagCTTGACCGGGTGTCCAGCCTGACGTCCAAGTACCTGGGGCGGCCCATCACGCAGCTGCCGCCGGCGCAGGCGGCGCTGTCCATGTCGTCGCTGGACCTGT
atttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagccgtttcgcattcaccgttgcgcttgcgccccgccattggtgtatttgtaccgcgctctcgtttcacacgcgcgtttcatgcggtatgggcagCTTGACCGGGTGTCCAGCCTGACGTCCAAGTACCTGGGGCGGCCCATCACGCAGCTGCCGCCGGCGCAGGCGGCGCTGTCCATGTCGTCGCTGGACCTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA