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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agatggcacacaatatatttcagttgctgacgctatttatttttttgatatgatgtggatatattttttgtgtatgttaatgcacctatcatgcttgcagAACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCCAAAAGTTACCTTGAGGATGTGATCGCCCACAAGCAGGCCATCCCGTTCC

Basic information

species Zea mays
transcript GRMZM2G126594_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G126594_T02 (Zea mays), 3'ss of exon 3
lower sequence: EFJ26852 (Selaginella moellendorffii), 3'ss of exon 2
agatggcacacaatatatttcagttgctgacgctatttatttttttgatatgatgtggatatattttttgtgtatg-ttaatgcacctatcatgcttgcagAACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCCAAAAGTTACCTTGAGGATGTGATCGCCCACAAGCAGGCCATCCCGTTCC
                               | | | |  ||  |||||  |||     | |  ||    || | | |    ||     || || | ||||||||| || ||||| ||    ||| | | |||| |    |||| |||||||||  | || || |||||||||||||||||||||||||| || || ||||
-----------------------------gtg-tgtgtgattgattgat-cgatccttgtgttcttgggctgaaagatctgggctttcttcgtg-tcgcagAACACCCGCGAGACCGCGCAGGCCATCAAGAAGCTCGAGCTCAGCAAGGCCAAGCGCTATCTGGAGGATGTGATCGCCCACAAGCAGGCGATTCCATTCC

upper sequence: GRMZM2G126594_T02 (Zea mays), 3'ss of exon 3
lower sequence: EFJ21308 (Selaginella moellendorffii), 3'ss of exon 2
agatggcacacaatatatttcagttgctgacgctatttatttttttgatatgatgtggatatattttttgtgtatgttaatgcacctatcatgcttgcagAACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCCAAAAGTTACCTTGAGGATGTGATCGCCCACAAGCAGGCCATCCCGTTCC
             | | | | | |   |||    ||  ||  || || | |   |  || | || |               ||     || || | ||||||||| || ||||| ||    ||| | | |||| |    |||| |||||||||  | || || |||||||||||||||||||||||||| || || ||||
------------gtgtgtgtgattgattgat-tgatcgatccttgtgttcttgggctgaaagatct-------------gggctttcttcgtg-tcgcagAACACCCGCGAGACCGCGCAGGCCATCAAGAAGCTCGAGCTCAGCAAGGCCAAGCGCTATCTGGAGGATGTGATCGCCCACAAGCAGGCGATTCCATTCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32863531|gb|CF003213.1|CF003213
EST:     CCGCCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG                         AACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
genomic: CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAGgtaagagatc ... atgcttgcagAACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
EST: gi|211490990|gb|FL061102.1|FL061102
EST:     CCGCCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG                         AACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
genomic: CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAGgtaagagatc ... atgcttgcagAACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
EST: gi|67034878|gb|CO463411.1|CO463411
EST:     CCGCCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG                         AACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
genomic: CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAGgtaagagatc ... atgcttgcagAACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
EST: gi|14701464|gb|BI233882.1|BI233882
EST:     CCGCCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG                         AACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
genomic: CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAGgtaagagatc ... atgcttgcagAACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
EST: gi|13149648|gb|BG319970.1|BG319970
EST:     CCGCCAAAGCCCATGGGCCGTGACCTACGTGTTCACTTCAAG                         AACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
genomic: CCG-CTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAGgtaagagatc ... atgcttgcagAACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
EST: gi|76011925|gb|DT939095.1|DT939095
EST:     CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG                         AACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
genomic: CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAGgtaagagatc ... atgcttgcagAACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
EST: gi|9731798|gb|BE510550.1|BE510550
EST:     CCACCAAGTCCGCCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG                         AACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
genomic: CCACCAAGTCCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAGgtaagagatc ... atgcttgcagAACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
EST: gi|67025568|gb|CO454317.1|CO454317
EST:     CCGCCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG                         AACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
genomic: CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAGgtaagagatc ... atgcttgcagAACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
EST: gi|29947113|gb|CB816488.1|CB816488
EST:     CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG                         AACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
genomic: CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAGgtaagagatc ... atgcttgcagAACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
EST: gi|78026411|gb|DV494798.1|DV494798
EST:     CCGCCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG                         AACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
genomic: CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAGgtaagagatc ... atgcttgcagAACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
EST: gi|76011924|gb|DT939094.1|DT939094
EST:     CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG                         AACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
genomic: CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAGgtaagagatc ... atgcttgcagAACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
EST: gi|33770648|gb|CF272942.1|CF272942
EST:     CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG                         AACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
genomic: CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAGgtaagagatc ... atgcttgcagAACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
EST: gi|78089300|gb|DV517674.1|DV517674
EST:     CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG                         AACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
genomic: CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAGgtaagagatc ... atgcttgcagAACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
EST: gi|211496762|gb|FL061129.1|FL061129
EST:     CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG                         AACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
genomic: CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAGgtaagagatc ... atgcttgcagAACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
EST: gi|33091741|gb|CF051735.1|CF051735
EST:     CCAAGTCCGCCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG                         AACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
genomic: CCAAGTCCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAGgtaagagatc ... atgcttgcagAACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
EST: gi|50333911|gb|CO529037.1|CO529037
EST:     CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG                         AACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
genomic: CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAGgtaagagatc ... atgcttgcagAACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
EST: gi|211490997|gb|FL061109.1|FL061109
EST:     CCGCCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG                         AACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
genomic: CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAGgtaagagatc ... atgcttgcagAACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
EST: gi|78089302|gb|DV517676.1|DV517676
EST:     CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG                         AACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
genomic: CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAGgtaagagatc ... atgcttgcagAACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
EST: gi|211490989|gb|FL061101.1|FL061101
EST:     CCGCCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG                         AACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
genomic: CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAGgtaagagatc ... atgcttgcagAACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
EST: gi|211493873|gb|FL061115.1|FL061115
EST:     CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG                         AACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
genomic: CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAGgtaagagatc ... atgcttgcagAACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
EST: gi|9255119|gb|BE345587.1|BE345587
EST:     AGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG                         AACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
genomic: AGGCCATGGGCCGTGACCTACGTGTTCACTTCAAGgtaagagatc ... atgcttgcagAACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
EST: gi|33102839|gb|CF062799.1|CF062799
EST:     CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG                         AACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
genomic: CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAGgtaagagatc ... atgcttgcagAACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
EST: gi|211496759|gb|FL061126.1|FL061126
EST:     CCGCCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG                         AACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
genomic: CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAGgtaagagatc ... atgcttgcagAACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
EST: gi|108824025|gb|EC278033.1|EC278033
EST:     CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG                         AACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
genomic: CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAGgtaagagatc ... atgcttgcagAACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
EST: gi|32910969|gb|CF015781.1|CF015781
EST:     CCGCCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG                         AACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
genomic: CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAGgtaagagatc ... atgcttgcagAACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
EST: gi|211386229|gb|FL452890.1|FL452890
EST:     CTACGTGTTCACTTCAAG                         AACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
genomic: CTACGTGTTCACTTCAAGgtaagagatc ... atgcttgcagAACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
EST: gi|60394642|gb|DN227512.1|DN227512
EST:     CCGCCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG                         AACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
genomic: CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAGgtaagagatc ... atgcttgcagAACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
EST: gi|31664276|gb|CD573001.1|CD573001
EST:     CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG                         AACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
genomic: CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAGgtaagagatc ... atgcttgcagAACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
EST: gi|76912495|gb|DV164760.1|DV164760
EST:     CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG                         AACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
genomic: CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAGgtaagagatc ... atgcttgcagAACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
EST: gi|30088089|gb|CB886294.1|CB886294
EST:     CCGCTAAGG-CATGGGCCGTGACCTACGTGTTCACTTCAAG                         AACACACGGGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
genomic: CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAGgtaagagatc ... atgcttgcagAACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
EST: gi|211496760|gb|FL061127.1|FL061127
EST:     CCGCCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG                         AACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
genomic: CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAGgtaagagatc ... atgcttgcagAACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
EST: gi|4730495|gb|AI649661.1|AI649661
EST:     CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG                         AACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
genomic: CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAGgtaagagatc ... atgcttgcagAACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
EST: gi|213172413|gb|FM189295.1|FM189295
EST:     CCGCCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG                         AACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
genomic: CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAGgtaagagatc ... atgcttgcagAACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
EST: gi|89755157|gb|DY685693.1|DY685693
EST:     CACCAAGTCCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG                         AACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
genomic: CACCAAGTCCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAGgtaagagatc ... atgcttgcagAACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
EST: gi|24765793|gb|CA400952.1|CA400952
EST:     CCGCCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG                         AACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
genomic: CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAGgtaagagatc ... atgcttgcagAACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
EST: gi|31358169|gb|CD442526.1|CD442526
EST:     CCGCCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG                         AACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
genomic: CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAGgtaagagatc ... atgcttgcagAACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
EST: gi|71434744|gb|DR815794.1|DR815794
EST:     CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG                         AACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
genomic: CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAGgtaagagatc ... atgcttgcagAACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
EST: gi|50329073|gb|CO524199.1|CO524199
EST:     CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG                         AACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
genomic: CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAGgtaagagatc ... atgcttgcagAACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
EST: gi|211199565|gb|FL177986.1|FL177986
EST:     CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG                         AACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
genomic: CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAGgtaagagatc ... atgcttgcagAACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
EST: gi|76912497|gb|DV164761.1|DV164761
EST:     CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG                         AACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
genomic: CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAGgtaagagatc ... atgcttgcagAACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatatgatgtggatatattttttgtgtatgttaatgcacctatcatgcttgcagAACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCCAAAAGTTACCTTGAGGATGTGATCGCCCACAAGCAGGCCATCCCGTTCC
                             tgttaat  putative branch site (score: 3)
             atatattttttgtgta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agatggcacacaatatatttcagttgctgacgctatttatttttttgatatgatgtggatatattttttgtgtatgttaatgcacctatcatgcttgcagAACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCCAAAAGTTACCTTGAGGATGTGATCGCCCACAAGCAGGCCATCCCGTTCC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG