Skip to another splice site:
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 5'  3'   		6  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctaaccaactcggctagaggctctttcgctaatgtccttttatagctagccatatacctattttgtttcgttccttattttttccctattttattgacagATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAG

Basic information

species Zea mays
transcript GRMZM2G126517_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G126517_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os08g39420.1 (Oryza sativa), 3'ss of exon 3
---------------------------------------ctaaccaactcggctagaggctctttcgctaatgtccttttatagctagccatatacctattttgtttcgttccttattttttc---cctattttattgacagATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAG
                                        |  ||||   |   ||       | | ||||      |||| || |    |||||  | | | || |  || |||  | |  |     |   | ||||| || | || |||||||| || || |||||||||||||| ||||||||||| || ||||| |||
gtgagtaccttgcacactagaaattggtcgttcagaatgttttccaatgtgttcagttatatctgcactaaaac---tttacagttg---atatatgtttctcgtcttattgcttcctgtaacgagttttactgattgaaagGTGGCCTCTGGTGGTAATGGTGCAACAACAGTTTCTGCCACTATGTTTTTCGCTCATAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211075732|gb|FL350793.1|FL350793
EST:     TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTC                         ATCGCATCTTGGTGGCAACGGGCGCAACAACAGTTTCGGCCACTATGTTCT
genomic: TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTCgtgagtgctc ... ttattgacagATCGCATCT-GGTGGCAACGG-CGCAACAACAGTTTCGGCCACTATGTTCT
EST: gi|211315779|gb|FL309515.1|FL309515
EST:     TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTC                         ATCGCATCTGGTGGCAACGGCGCAACAACAGT
genomic: TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTCgtgagtgctc ... ttattgacagATCGCATCTGGTGGCAACGGCGCAACAACAGT
EST: gi|211002330|gb|FL358914.1|FL358914
EST:     TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTC                         ATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
genomic: TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTCgtgagtgctc ... ttattgacagATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
EST: gi|67038503|gb|CO464823.1|CO464823
EST:     TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTC                         ATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
genomic: TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTCgtgagtgctc ... ttattgacagATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
EST: gi|211098559|gb|FL329018.1|FL329018
EST:     TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTC                         ATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
genomic: TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTCgtgagtgctc ... ttattgacagATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
EST: gi|149082843|gb|EE172069.2|EE172069
EST:     TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTC                         ATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
genomic: TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTCgtgagtgctc ... ttattgacagATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
EST: gi|211522432|gb|FL327537.1|FL327537
EST:     TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTC                         ATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
genomic: TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTCgtgagtgctc ... ttattgacagATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
EST: gi|211442644|gb|FL343500.1|FL343500
EST:     TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTC                         ATCGCATCTGGTGGC
genomic: TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTCgtgagtgctc ... ttattgacagATCGCATCTGGTGGC
EST: gi|211526413|gb|FL361961.1|FL361961
EST:     TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTC                         ATCGCATCTGGTGGCAACGGCGC
genomic: TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTCgtgagtgctc ... ttattgacagATCGCATCTGGTGGCAACGGCGC
EST: gi|211469725|gb|FL319610.1|FL319610
EST:     TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTC                         ATCGCATCTGGTNGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
genomic: TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTCgtgagtgctc ... ttattgacagATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
EST: gi|211193875|gb|FL364459.1|FL364459
EST:     TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTC                         ATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
genomic: TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTCgtgagtgctc ... ttattgacagATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
EST: gi|149015839|gb|EE045506.2|EE045506
EST:     TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTC                         ATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
genomic: TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTCgtgagtgctc ... ttattgacagATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
EST: gi|211370472|gb|FL346947.1|FL346947
EST:     TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTC                         ATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
genomic: TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTCgtgagtgctc ... ttattgacagATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
EST: gi|211152952|gb|FL361222.1|FL361222
EST:     TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTC                         ATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
genomic: TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTCgtgagtgctc ... ttattgacagATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
EST: gi|211177454|gb|FL359127.1|FL359127
EST:     TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTC                         ATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
genomic: TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTCgtgagtgctc ... ttattgacagATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
EST: gi|211327335|gb|FL364053.1|FL364053
EST:     TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTC                         ATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
genomic: TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTCgtgagtgctc ... ttattgacagATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
EST: gi|211483892|gb|FL352027.1|FL352027
EST:     TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTC                         ATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
genomic: TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTCgtgagtgctc ... ttattgacagATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
EST: gi|211419354|gb|FL322259.1|FL322259
EST:     TMAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTC                         ATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
genomic: TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTCgtgagtgctc ... ttattgacagATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
EST: gi|211088384|gb|FL316163.1|FL316163
EST:     TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTC                         ATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGGCCACTATGTTCTT
genomic: TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTCgtgagtgctc ... ttattgacagATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGG-CCACTATGTTCTT
EST: gi|211350028|gb|FL354311.1|FL354311
EST:     TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTC                         ATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGG
genomic: TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTCgtgagtgctc ... ttattgacagATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGG
EST: gi|211103326|gb|FL320696.1|FL320696
EST:     TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTC                         ATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
genomic: TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTCgtgagtgctc ... ttattgacagATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
EST: gi|31355893|gb|CD440250.1|CD440250
EST:     TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTC                         ATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
genomic: TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTCgtgagtgctc ... ttattgacagATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
EST: gi|211385441|gb|FL308637.1|FL308637
EST:     TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTC                         ATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
genomic: TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTCgtgagtgctc ... ttattgacagATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
EST: gi|78085709|gb|DV514102.1|DV514102
EST:     TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTC                         ATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
genomic: TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTCgtgagtgctc ... ttattgacagATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
EST: gi|211308601|gb|FL359174.1|FL359174
EST:     TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTC                         ATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCAC
genomic: TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTCgtgagtgctc ... ttattgacagATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCAC
EST: gi|211023720|gb|FL334133.1|FL334133
EST:     TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTC                         ATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTT
genomic: TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTCgtgagtgctc ... ttattgacagATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTT
EST: gi|211239930|gb|FL353209.1|FL353209
EST:     TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTC                         ATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
genomic: TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTCgtgagtgctc ... ttattgacagATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
EST: gi|211033669|gb|FL344494.1|FL344494
EST:     TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTC                         ATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
genomic: TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTCgtgagtgctc ... ttattgacagATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
EST: gi|211526420|gb|FL361968.1|FL361968
EST:     TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTC                         ATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
genomic: TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTCgtgagtgctc ... ttattgacagATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
EST: gi|211383364|gb|FL329669.1|FL329669
EST:     YAAGYGGAAGGCAATTTCAGAAGACGGCTAGAAGGGAYATTGTCCATGTC                         ATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
genomic: TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTCgtgagtgctc ... ttattgacagATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
EST: gi|211023235|gb|FL319676.1|FL319676
EST:     TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTC                         ATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
genomic: TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTCgtgagtgctc ... ttattgacagATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
EST: gi|211115835|gb|FL357318.1|FL357318
EST:     TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTC                         ATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
genomic: TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTCgtgagtgctc ... ttattgacagATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
EST: gi|211386536|gb|FL356614.1|FL356614
EST:     TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTC                         ATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
genomic: TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTCgtgagtgctc ... ttattgacagATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
EST: gi|211216455|gb|FL358323.1|FL358323
EST:     TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTC                         ATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
genomic: TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTCgtgagtgctc ... ttattgacagATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
EST: gi|211472964|gb|FL344042.1|FL344042
EST:     TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTC                         ATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
genomic: TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTCgtgagtgctc ... ttattgacagATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
EST: gi|211522504|gb|FL328840.1|FL328840
EST:     TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTC                         ATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
genomic: TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTCgtgagtgctc ... ttattgacagATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
EST: gi|211267860|gb|FL346397.1|FL346397
EST:     TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTC                         ATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
genomic: TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTCgtgagtgctc ... ttattgacagATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
EST: gi|211028268|gb|FL325354.1|FL325354
EST:     TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTC                         ATCGCATCTGGTGGCAACGGCGCAAC
genomic: TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTCgtgagtgctc ... ttattgacagATCGCATCTGGTGGCAACGGCGCAAC
EST: gi|211229181|gb|FL350913.1|FL350913
EST:     TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTC                         ATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
genomic: TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTCgtgagtgctc ... ttattgacagATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
EST: gi|211370106|gb|FL332774.1|FL332774
EST:     TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTC                         ATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
genomic: TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTCgtgagtgctc ... ttattgacagATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
EST: gi|211472115|gb|FL315175.1|FL315175
EST:     TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTC                         ATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
genomic: TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTCgtgagtgctc ... ttattgacagATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
EST: gi|211404920|gb|FL353800.1|FL353800
EST:     TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTC                         ATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
genomic: TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTCgtgagtgctc ... ttattgacagATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
EST: gi|211258208|gb|FL352264.1|FL352264
EST:     AAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGGATATTGTCCATGTC                         ATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
genomic: AAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGG-ATATTGTCCATGTCgtgagtgctc ... ttattgacagATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
EST: gi|74236392|gb|DT644306.1|DT644306
EST:     TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTC                         ATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
genomic: TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTCgtgagtgctc ... ttattgacagATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
EST: gi|211338223|gb|FL361344.1|FL361344
EST:     TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTC                         ATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
genomic: TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTCgtgagtgctc ... ttattgacagATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
EST: gi|211526419|gb|FL361967.1|FL361967
EST:     TAAGTGGAAGGCAATTTCAGAAGACGGCTACAAGGGATATTGTCCATGTC                         ATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
genomic: TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTCgtgagtgctc ... ttattgacagATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
EST: gi|211500698|gb|FL332814.1|FL332814
EST:     TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTC                         ATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
genomic: TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTCgtgagtgctc ... ttattgacagATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
EST: gi|211420492|gb|FL364949.1|FL364949
EST:     TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTC                         ATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
genomic: TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTCgtgagtgctc ... ttattgacagATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
EST: gi|211526578|gb|FL367182.1|FL367182
EST:     TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTC                         ATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
genomic: TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTCgtgagtgctc ... ttattgacagATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
EST: gi|31355559|gb|CD439916.1|CD439916
EST:     TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAATGGATATTGTCCATGTC                         ATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
genomic: TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTCgtgagtgctc ... ttattgacagATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
EST: gi|211422400|gb|FL340223.1|FL340223
EST:     TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTC                         ATCGCATCTGGTGGCAACGGCGCAACAACAGGTTTCGGGCCACTATGTTCT
genomic: TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTCgtgagtgctc ... ttattgacagATCGCATCTGGTGGCAACGGCGCAACAACAG-TTTCGG-CCACTATGTTCT
EST: gi|71764027|gb|DR961964.1|DR961964
EST:     TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTC                         ATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
genomic: TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTCgtgagtgctc ... ttattgacagATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTT
EST: gi|101391313|gb|EB817591.1|EB817591
EST:     TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTC                         ATCGCATCTGGTGGCAACGGCCGCA-CAACCAGTTTCGGCCACTATGTTCT
genomic: TAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTCgtgagtgctc ... ttattgacagATCGCATCTGGTGGCAACGGC-GCAACAAC-AGTTTCGGCCACTATGTTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctagccatatacctattttgtttcgttccttattttttccctattttattgacagATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAG
           cctattttgtttcgtt  CT-rich tract
                             ttattttttccctatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ctaaccaactcggctagaggctctttcgctaatgtccttttatagctagccatatacctattttgtttcgttccttattttttccctattttattgacagATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAG

ctaacca
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