Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagacgtcgcgtcacggcccctcgctgtccgcccgcgcccccgcgccaccgtttcacgttggattggagctccctgcccctgtccctgtcgtgcgctgcggatgaactggacggggggacggcttcctaatcctaaccgaaatgaatagactaactcatcgctgtgccttgcctgtgctggctggctgcagGGTACCTGATCCCCAAGGGCTGGAAGGTGTTGCCCCTGTTCCGGAACATCCACCACAGCCCCGACCACTTCCCCTGCCCGGACAAGTTCGACCCCTCCCG

Basic information

species Zea mays
transcript GRMZM2G126505_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G126505_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os02g47470.1 (Oryza sativa), 3'ss of exon 3
gtgagacgtcgcgtcacggcccctcgctgtccgcccgcgcccccgcgccaccgtttcacgttggattggagctccctgcccctgtccctgtcgtgcgctgcggatgaactggacggggggacggcttcctaatcctaaccgaaatgaatagactaactcatcgctgtgccttgcctg--tgctggctggctgcagGGTACCTGATCCCCAAGGGCTGGAAGGTGTTGCCCCTGTTCCGGAACATCCACCACAGCCCCGACCACTTCCCCTGCCCGGACAAGTTCGACCCCTCCCG
          | |   | |  |   ||||||||   ||  ||  |  |  || ||||  |   |  | | ||| |   |  | |   |    |||  ||| |   |||  || | |   |    |||        ||  | || |  ||       | ||        ||| |   |   |   |||   |||||||||||||||||||||||||||||| ||| | || |||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||
--------gtgagcagcagagcagagctgtccggtggcagcct-gtccgtccctttcgagacagcctcgcgcttct--cttccgctgcga--gtgaactg-gaccgaatggggcagactggttccttaactgaaatagactaactcgatcagtcgtcccagaatctaacctcgttcgatcgtctgctctgtgcagGGTACCTGATCCCCAAGGGCTGGAAAGTGCTACCTCTGTTCCGCAACATCCACCACAACCCCGACCACTTCCCCTGCCCGGAAAAGTTCGACCCGTCCCG

upper sequence: GRMZM2G126505_T02 (Zea mays), 3'ss of exon 3
lower sequence: EFJ30794 (Selaginella moellendorffii), 3'ss of exon 6
gtgagacgtcgcgtcacggcccctcgctgtccgcccgcgcccccgcgccaccgtttcacgttggattggagctccctgcccctgtccctgtcgtgcgctgcggatgaactggacggggggacggcttcctaatcctaaccgaaatgaatagactaactcatcgctgtgccttgcctgtgctggctggctgcagGGTACCTGATCCCCAAGGGCTGGAAGGTGTTGCCCCTGTTCCGGAACATCCACCACAGCCCCGACCACTTCCCCTGCCCGGACAAGTTCGACCCCTCCCG
                                                                                            ||  |  |  | |   |  | |       | |   | | |   |   | |||  ||  ||  | || | || | | ||  |    ||||   ||||   ||| ||| |||| |||||||||||||| ||| |||| |||||| | |||||||| |||||||||||    ||||     ||| | |||||| |||||||| |
--------------------------------------------------------------------------------------------gtaagaagttg-tagcccagcccctccctctgtaacatcacggttggcaaaagaaaagga--agctaaccgttttacccggaacttgct--ttggc---agGATACGTGATTCCCAAGGGCTGGAAAGTGATGCCTCTGTTCAGAAACATCCATCACAGCCCCGAGTTTTTCCTGGAGCCGCAGAAGTTCAACCCCTCCAG

upper sequence: GRMZM2G126505_T02 (Zea mays), 3'ss of exon 3
lower sequence: EFJ26689 (Selaginella moellendorffii), 3'ss of exon 6
gtgagacgtcgcgtcacggcccctcgctgtccgcccgcgcccccgcgccaccgtttcacgttggattggagctccctgcccctgtccctgtcgtgcgctgcggatgaactggacggggggacggcttcctaatcctaaccgaaatgaatagactaactcatcgctgtgccttgcctgtgctggctggctgcagGGTACCTGATCCCCAAGGGCTGGAAGGTGTTGCCCCTGTTCCGGAACATCCACCACAGCCCCGACCACTTCCCCTGCCCGGACAAGTTCGACCCCTCCCG
                                                                                            ||    | |   | ||         ||  |  || |   | | |    |||   | | |||  |||     || || ||||| ||||     |      ||  ||| | ||||||||||||||||| ||| |||| |||||| |||   ||||||||||||| |||  ||||||   |||   |||||| || |||||| |
--------------------------------------------------------------------------------------------gtattttacttgttaaacaagtcttggttcttctcctcgagctt---tgaa---agttgac--actgtcaactctggcttgcgtgtgacaaat------agATTACATAATCCCCAAGGGCTGGAAAGTGATGCCGCTGTTCAGGATGCTCCACCACAGCCCAGACTTCTTCCCGGACCCATTCAAGTTTGATCCCTCCAG

upper sequence: GRMZM2G126505_T02 (Zea mays), 3'ss of exon 3
lower sequence: EFJ22851 (Selaginella moellendorffii), 3'ss of exon 6
gtgagacgtcgcgtcacggcccctcgctgtccgcccgcgcccccgcgccaccgtttcacgttggattggagctccctgcccctgtccctgtcgtgcgctgcggatgaactggacggggggacggcttcctaatcctaaccgaaatgaatagactaactcatcgctgtgccttgcctgtgctggctggctgcagGGTACCTGATCCCCAAGGGCTGGAAGGTGTTGCCCCTGTTCCGGAACATCCACCACAGCCCCGACCACTTCCCCTGCCCGGACAAGTTCGACCCCTCCCG
                                                                                            ||  |  |  | |   |  | |       | |   | | |   |   | |||  ||  ||  | || | || | | ||  |    ||||   ||||   ||| ||| |||| |||||||||||||| ||| |||| |||||| | |||||||| |||||||||||    ||||     ||| | ||||||||||||||| |
--------------------------------------------------------------------------------------------gtaagaagttg-tagcccagcccctccctctgtaacatcacggttggcaaaagaaaagga--agctaaccgttttacccggaacttgct--ttggc---agGATACGTGATTCCCAAGGGCTGGAAAGTGATGCCTCTGTTCAGAAACATCCATCACAGCCCCGAGTTTTTCCTGGAGCCGCAGAAGTTCGACCCCTCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccgaaatgaatagactaactcatcgctgtgccttgcctgtgctggctggctgcagGGTACCTGATCCCCAAGGGCTGGAAGGTGTTGCCCCTGTTCCGGAACATCCACCACAGCCCCGACCACTTCCCCTGCCCGGACAAGTTCGACCCCTCCCG
            gactaac  putative branch site (score: 1)
     atgaata  TA-rich tract