1 5' 3' | 2 5' 3' | 3 5' 3' |
gtacggatacttccgaattccaataccagcaactctgcttgatctcatctcgttatgggattggttctgaaatctgaattggtatgagcttgtgccgtgcagGACATCCATTGCCAGGGAATGCAGCTGAAGCAGTCCCCTGCGCCGATCGGATACCACTGAGGATGTTTGTGCTCTTCTTAATTTTGCATCGCTAATAAGC
species | Zea mays |
transcript | GRMZM2G125669_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCGTCCGCGCCGACGAGGCTCACCACCGCGACGTCAACCACTTTGCATCG GACATCCATTGCCAGGGAATGCAGCTGAAGCAGTCCCCTGCGCCGATCGGAEST: gi|148960976|gb|EE011673.2|EE011673
genomic: TCGTCCGCGCCGACGAGGCTCACCACCGCGACGTCAACCACTTTGCATCGgtacggatac ... tgccgtgcagGACATCCATTGCCAGGGAATGCAGCTGAAGCAGTCCCCTGCGCCGATCGGA
EST: TCGTCCGCGCCGACGAGGCTCACCACCGCGACGTCAACCACTTTGCATCG GACATCCATTGCCAGGGAATGCAGCTGAAGCAGTCCCCTGCGCCGATCGGAEST: gi|84980029|gb|DW530378.1|DW530378
genomic: TCGTCCGCGCCGACGAGGCTCACCACCGCGACGTCAACCACTTTGCATCGgtacggatac ... tgccgtgcagGACATCCATTGCCAGGGAATGCAGCTGAAGCAGTCCCCTGCGCCGATCGGA
EST: TCGTCCGCGCCGACGAGGCTCACCACCGCGACGTCAACCACTTTGCATCG GACATCCATTGCCAGGGAATGCAGCTGAAGCAGTCCCCTGCGCCGATCGGAEST: gi|71760017|gb|DR957954.1|DR957954
genomic: TCGTCCGCGCCGACGAGGCTCACCACCGCGACGTCAACCACTTTGCATCGgtacggatac ... tgccgtgcagGACATCCATTGCCAGGGAATGCAGCTGAAGCAGTCCCCTGCGCCGATCGGA
EST: TCGTCCGCGCCGACGAGGCTCACCACCGCGACGTCAACCACTTTGCATCG GACATCCATTGCCAGGGAATGCAGCTGAAGCAGTCCCCTGCGCCGATCGGAEST: gi|32793039|gb|CD945275.1|CD945275
genomic: TCGTCCGCGCCGACGAGGCTCACCACCGCGACGTCAACCACTTTGCATCGgtacggatac ... tgccgtgcagGACATCCATTGCCAGGGAATGCAGCTGAAGCAGTCCCCTGCGCCGATCGGA
EST: TCGTCCGCGCCGACGAGGCTCACCACCGCGACGTCAACCACTTTGCATCG GACATCCATTGCCAGGGAATGCAGCTGAAGCAGTCCCCTGCGCCGATCGGAEST: gi|32823836|gb|CD963558.1|CD963558
genomic: TCGTCCGCGCCGACGAGGCTCACCACCGCGACGTCAACCACTTTGCATCGgtacggatac ... tgccgtgcagGACATCCATTGCCAGGGAATGCAGCTGAAGCAGTCCCCTGCGCCGATCGGA
EST: TCGTCCGCGCCGACGAGGCTCACCACCGCGACGTCAACCACTTTGCATCG GACATCCATTGCCAGGGAATGCAGCTGAAGCAGTCCCCTGCGCCGATCGGAEST: gi|148947764|gb|EC893250.2|EC893250
genomic: TCGTCCGCGCCGACGAGGCTCACCACCGCGACGTCAACCACTTTGCATCGgtacggatac ... tgccgtgcagGACATCCATTGCCAGGGAATGCAGCTGAAGCAGTCCCCTGCGCCGATCGGA
EST: TCGTCCGCGCCGACGAGGCTCACCACCGCGACGTCAACCACTTTGCATCG GACATCCATTGCCAGGGAATGCAGCTGAAGCAGTCCCCTGCGCCGATCGGAEST: gi|32823536|gb|CD963258.1|CD963258
genomic: TCGTCCGCGCCGACGAGGCTCACCACCGCGACGTCAACCACTTTGCATCGgtacggatac ... tgccgtgcagGACATCCATTGCCAGGGAATGCAGCTGAAGCAGTCCCCTGCGCCGATCGGA
EST: TCGTCCGCGCCGACGAGGCTCACCACCGCGACGTCAACCACTTTGCATCG GACATCCATTGCCAGGGAATGCAGCTGAAGCAGTCCCCTGCGCCGATCGGAEST: gi|32857100|gb|CD996781.1|CD996781
genomic: TCGTCCGCGCCGACGAGGCTCACCACCGCGACGTCAACCACTTTGCATCGgtacggatac ... tgccgtgcagGACATCCATTGCCAGGGAATGCAGCTGAAGCAGTCCCCTGCGCCGATCGGA
EST: TCGTCCGCGCCGACGAGGCTCACCACCGCGACGTCAACCACTTTGCATCG GACATCCATTGCCAGGGAATGCAGCTGAAGCAGTCCCCTGCGCCGATCGGAEST: gi|211424828|gb|FL445176.1|FL445176
genomic: TCGTCCGCGCCGACGAGGCTCACCACCGCGACGTCAACCACTTTGCATCGgtacggatac ... tgccgtgcagGACATCCATTGCCAGGGAATGCAGCTGAAGCAGTCCCCTGCGCCGATCGGA
EST: TCGTCCGCGCCGACGAGGCTCACCACCGCGACGTCAACCACTTTGCATCG GACATCCATTGCCAGGGAATGCAGCTGAAGCAGTCCCCTGCGCCGATCGGA
genomic: TCGTCCGCGCCGACGAGGCTCACCACCGCGACGTCAACCACTTTGCATCGgtacggatac ... tgccgtgcagGACATCCATTGCCAGGGAATGCAGCTGAAGCAGTCCCCTGCGCCGATCGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacggatacttccgaattccaataccagcaactctgcttgatctcatctcgttatgggattggttctgaaatctgaattggtatgagcttgtgccgtgcagGACATCCATTGCCAGGGAATGCAGCTGAAGCAGTCCCCTGCGCCGATCGGATACCACTGAGGATGTTTGTGCTCTTCTTAATTTTGCATCGCTAATAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG