1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtttgtccagcttctgttgttccctgtttatgttcatgttaaactctcaattccaacatgttgtttgttttccagTTCCCATTCTTTTGCAGTGACCGTGAATACATCTTTGGAGGACGCATATGGGAATCTGGGAAGACTTACTATTGTGTTACAAAG
species | Zea mays |
transcript | GRMZM2G124965_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGATGAGTTCCCTCAGAATGGAGCAACAATTGTCCACTGGATAAAAAAG TTCCCATTCTTTTGCAGTGACCGTGAATACATCTTTGGAGGACGCATATGGEST: gi|149083327|gb|EE172619.2|EE172619
genomic: TGGATGAGTTCCCTCAGAATGGAGCAACAATTGTCCACTGGATAAAAAAGgtttgtccag ... tgttttccagTTCCCATTCTTTTGCAGTGACCGTGAATACATCTTTGGAGGACGCATATGG
EST: TGGATGAGTTCCCTCAGAATGGAGCAACAATTGTCCACTGGATAAAAAAG TTCCCATTCTTTTGCAGTGACCGTGAATACATCTTTTGGGAG-ACGCATATEST: gi|71769408|gb|DR967345.1|DR967345
genomic: TGGATGAGTTCCCTCAGAATGGAGCAACAATTGTCCACTGGATAAAAAAGgtttgtccag ... tgttttccagTTCCCATTCTTTTGCAGTGACCGTGAATACATCTTT-GG-AGGACGCATAT
EST: TGGATGAGTTCCCTCAGAATGGAGCAACAATTGTCCACTGGATAAAAAAG TTCC-ATTCTTTTGCAGTGACCGTGAATACATCTTTGGAGGACGCATATGGEST: gi|149111705|gb|EE190850.2|EE190850
genomic: TGGATGAGTTCCCTCAGAATGGAGCAACAATTGTCCACTGGATAAAAAAGgtttgtccag ... tgttttccagTTCCCATTCTTTTGCAGTGACCGTGAATACATCTTTGGAGGACGCATATGG
EST: TGGATGAGTTCCCTCAGAATGGAGCACCAATTGTCCACTGGATAAAAAAG T-CCCATTCTTTTGCAGTGACCGTGAATACATCTTTGGGAGGACGCAEST: gi|91055562|gb|EB165980.1|EB165980
genomic: TGGATGAGTTCCCTCAGAATGGAGCAACAATTGTCCACTGGATAAAAAAGgtttgtccag ... tgttttccagTTCCCATTCTTTTGCAGTGACCGTGAATACATCTTTGG-AGGACGCA
EST: TGGATGAGTTCCCTCAGAATGGAGCAACAATTGTCCACTGGATAAAAAAG TTCCCATTCTTTTGCAGTGACCGTGAATACATCTTTGGAGGACGCAEST: gi|71437018|gb|DR818068.1|DR818068
genomic: TGGATGAGTTCCCTCAGAATGGAGCAACAATTGTCCACTGGATAAAAAAGgtttgtccag ... tgttttccagTTCCCATTCTTTTGCAGTGACCGTGAATACATCTTTGGAGGACGCA
EST: TGGATGAGTTCCCTCAGAATGGAGCAACAAATGTCCACTGGATAAAAAAG TTCCCATTCTTTTGCAGTGACCGTGAATAEST: gi|94472323|gb|EB701281.1|EB701281
genomic: TGGATGAGTTCCCTCAGAATGGAGCAACAATTGTCCACTGGATAAAAAAGgtttgtccag ... tgttttccagTTCCCATTCTTTTGCAGTGACCGTGAATA
EST: TGGATGAGTTCCCTCAGAATGGAGCAACAATTGTCCACTGGATAAAAA-G TTCCCATTCTTTTGCAGTGACCGTGAATAEST: gi|31354728|gb|CD439085.1|CD439085
genomic: TGGATGAGTTCCCTCAGAATGGAGCAACAATTGTCCACTGGATAAAAAAGgtttgtccag ... tgttttccagTTCCCATTCTTTTGCAGTGACCGTGAATA
EST: TGGATGAGTTCCCTCAGAATGGAGCAACAATTGTCCACTGGATAAAAAAG TTCCCCATTCTTTTGCAGTGACCGTGAATACAT
genomic: TGGATGAGTTCCCTCAGAATGGAGCAACAATTGTCCACTGGATAAAAAAGgtttgtccag ... tgttttccagTTCCC-ATTCTTTTGCAGTGACCGTGAATACAT
tccctgtttatgttcatgttaaactctcaattccaacatgttgtttgttttccagTTCCCATTCTTTTGCAGTGACCGTGAATACATCTTTGGAGGACGCATATGGGAATCTGGGAAGACTTACTATTGTGTTACAAAG
tttgttttcc CT-rich tract
tttatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtccagcttctgttgttccctgtttatgttcatgttaaactctcaattccaacatgttgtttgttttccagTTCCCATTCTTTTGCAGTGACCGTGAATACATCTTTGGAGGACGCATATGGGAATCTGGGAAGACTTACTATTGTGTTACAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA