1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaactgcagctatttaaaccactagatggatgttagtattggcgtaattctagtagcatgtaaaccattcttgcttggttgtcctgtccactcacgcagGACAGGAAGACAAGGGAGAAGGAGCTTCTGGCCAAGGAGGCCGAGTTGAACAGGCGTGAGAAG
species | Zea mays |
transcript | GRMZM2G124918_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGACTTCGCTACTCCAGTGGATATCCCCATGGACGACACAAACAACAAG GACAGGAAGACAAGGGAGAAGGAGCTTCTGGCCAAGGAGGCCGAGTTGAACEST: gi|211468481|gb|FL364661.1|FL364661
genomic: ATGACTTCGCTACTCCAGTGGATATCCCCATGGACGACACAAACAACAAGgtaactgcag ... actcacgcagGACAGGAAGACAAGGGAGAAGGAGCTTCTGGCCAAGGAGGCCGAGTTGAAC
EST: ATGACTTCGCTACTCCAGKGGATATCCCCATGGACGACACAAACAACAAG GACAGGAAGACAAGGGAGAAGGAGCTTCTGGCCAAGGAGGCCGARTTGAACEST: gi|78111675|gb|DV530072.1|DV530072
genomic: ATGACTTCGCTACTCCAGTGGATATCCCCATGGACGACACAAACAACAAGgtaactgcag ... actcacgcagGACAGGAAGACAAGGGAGAAGGAGCTTCTGGCCAAGGAGGCCGAGTTGAAC
EST: ATGACTTCGCTACTCCAGTGGATATCCCCATGGACGACACAAACAACAAG GACAGGAAGACAAGGGAGAAGGAGCTTCTGGCCAAGGAGGCCGAGTTGAAC
genomic: ATGACTTCGCTACTCCAGTGGATATCCCCATGGACGACACAAACAACAAGgtaactgcag ... actcacgcagGACAGGAAGACAAGGGAGAAGGAGCTTCTGGCCAAGGAGGCCGAGTTGAAC
taattctagtagcatgtaaaccattcttgcttggttgtcctgtccactcacgcagGACAGGAAGACAAGGGAGAAGGAGCTTCTGGCCAAGGAGGCCGAGTTGAACAGGCGTGAGAAG
cactcac putative branch site (score: 94)
tccactc CT-rich tract
atgtaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactgcagctatttaaaccactagatggatgttagtattggcgtaattctagtagcatgtaaaccattcttgcttggttgtcctgtccactcacgcagGACAGGAAGACAAGGGAGAAGGAGCTTCTGGCCAAGGAGGCCGAGTTGAACAGGCGTGAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG