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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacagacttctatttcttttgatcaacatatgctactttatgtttgcattactaaagttcagtcctggaatttgctcaagtgcttcctaatgacattgcagAAGGTCAACTTCATGAAGTAAAAAGAATGAAGGCTCCCACCATGTCTCCTCAACCTGGACGTTCCATTGATCAACCCTCCATAGTTATTTCTGACGCACT

Basic information

species Zea mays
transcript GRMZM2G124502_T01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71445750|gb|DR826800.1|DR826800
EST:     AAATGAATAAATTATTGGCTAAGCACATAACCCCACTTGACCCAA                         AAGGTCAACTTCATGAAGTAAAAAGAATGAAGGCTCCCACCATGTCTCCTC
genomic: AAATGAATAAATTATTGGCTAAGCACATAACCCCACTTGACCCAAgtacagactt ... gacattgcagAAGGTCAACTTCATGAAGTAAAAAGAATGAAGGCTCCCACCATGTCTCCTC
EST: gi|71440370|gb|DR821420.1|DR821420
EST:     GTTTAAAATGAATAAATTATTGGCTAAGCACATAACCCCACTTGACCCAA                         AAGGTCAACTTCATGAAGTAAAAAGAATGAAGGCTCCCACCATGTCTCCTC
genomic: GTTTAAAATGAATAAATTATTGGCTAAGCACATAACCCCACTTGACCCAAgtacagactt ... gacattgcagAAGGTCAACTTCATGAAGTAAAAAGAATGAAGGCTCCCACCATGTCTCCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattactaaagttcagtcctggaatttgctcaagtgcttcctaatgacattgcagAAGGTCAACTTCATGAAGTAAAAAGAATGAAGGCTCCCACCATGTCTCCTCAACCTGGACGTTCCATTGATCAACCCTCCATAGTTATTTCTGACGCACT
      taaagtt  TA-rich tract