Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagcatttggtccagtgttattttcttgtgcataatttattatgttgtgcaactgtgagttattcttgattgtgtctgtcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGCTCTTGATGTGGCCAACAAAATCGGCATCATCTAAAGTTACCGCGTCAGG

Basic information

species Zea mays
transcript GRMZM2G124411_T04
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G124411_T04 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os04g42270.1 (Oryza sativa), 3'ss of exon 3
gttagcatttggtccagtgttattttcttgtgcataatttattatgttgtgcaactgtgagttattcttgattgtgtctgtcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGCTCTTGATGTGGCCAACAAAATCGGCATCATCTAAAGTTACCGCGTCAGG-
||||||| ||       |  |   || |   || | ||||  || || ||| |  |   |  |   | |  |||| |        |||||||||||||| ||||||||||||||||||||||| |  || ||||| |||||||| || ||||||||||| || |||||||||||| ||||  | |      
gttagcactttccttcatacttcattttatcgcttgatttgctaggtagtgtagtt---aactgaccctacttgtct--------tccagGCCTGATGGGAAGAAGAAGGCTTACGTGAAGCTGACACCAGACTACGATGCTCTCGACGTGGCCAACAAGATTGGCATCATCTAA-GTTAGGGTGCTGCAG

upper sequence: GRMZM2G124411_T04 (Zea mays), 3'ss of exon 3
lower sequence: AT2G39460.1 (Arabidopsis thaliana), 3'ss of exon 2
gttagcatttggtccagtgttattttcttgtgcataatttattatgttgtgcaactgtgagttattcttgattgtgtct--gtcctgtc-cagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGCTCTTGATGTGGCCAACAAAATCGGCATCATCTAAAGTTACC-GCGTCAGG
    | | ||     ||| || || | |   || |  ||  | |  |||   |  |   |  ||||    | | ||  |  ||  |||  ||||||||||||||  |||||||||||||||| |||||  || |||||||||||| | ||||| || ||||| |||||||||||||||   || |    || | 
----gtactttaaagagtatttttctatgaagccttgtt-gtgagattgattatgttcaatatatttgacactatggtttggttttgttacagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGCTTTGGATGTTGCTAACAAGATCGGCATCATCTAAGTCTATCTATCTCTG-

upper sequence: GRMZM2G124411_T04 (Zea mays), 3'ss of exon 3
lower sequence: AT3G55280.1 (Arabidopsis thaliana), 3'ss of exon 3
gttagcatttggtccagtgttattttcttgtgcataatttattatgttgtgcaactgtgagttattcttgattgtgtctgtcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGCTCTTGATGTGGCCAACAAAATCGGCATCATCTAAAGTTACCGC-GTCAGG
               |    ||     |      | |  |||    || || ||   ||   |     ||| ||| | | |  | | |||||| |||||||  |||||||| || |||| | | |  ||||| ||||||||| | |||||||| ||||||||||| |||||||||  | | |   |||   
------------gtaaacactaaaacttcac---tgagatatgggtttatgtaaacatggagtga---tgagtgtatgt-ttgtatgcagGCCCGATGGAACAAAGAAGGCGTATGTGAGGTTGACTCCTGATTATGATGCTTTGGATGTGGCTAACAAAATCGGGATCATCTAATCTGATCATTGTCGC-

upper sequence: GRMZM2G124411_T04 (Zea mays), 3'ss of exon 3
lower sequence: Vv06s0004g04090.t01 (Vitis vinifera), 3'ss of exon 3
---gttagcatttggtccagtgttattttcttgtgcataatt--tattatgttgtgcaac-----tgtgagttattcttgattgtgtctgtcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGCTCTTGATGTGGCCAACAAAATCGGCATCATCTAAAGTTACCGC-GTCAGG
   | | | ||    |  | | | | | || || |||  | |  | || || || | ||       |  |  | ||||    |   | | |    |||||||||||||| |  |||||||| || || | | | |  || |||||||||||  | ||||||||||||||||| || ||||||||| ||     | |||   
ttagattggataaacttaattatgaatatcctgagcaagaatgttcttttgctgggaaatattttcgacaactcttctgacattaatttttgtgatccagGCCTGATGGTACCAAGAAGGCGTATGTTAGGTTGACCCCAGACTATGATGCCTTGGATGTGGCCAACAAAATTGGGATCATCTAAGGTAGGATCTGTCTA-

upper sequence: GRMZM2G124411_T04 (Zea mays), 3'ss of exon 3
lower sequence: PP1S459_11V6.1 (Physcomitrella patens), 3'ss of exon 1
--------gttagcatttggtccagtgttattttcttgtg----cataatttattatgttgtgcaactgtgagttattcttgattgtgtctgtcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGCTCTTGATGTGGCCAACAAAATCGGCATCATCTAAAGTTACCGCGTCAGG-
         || | |||| ||   |  ||  | ||   ||    |||   |   || | |||| || |   | |  |  |  | | | ||| |  | || ||||||||||||   ||||||||||||||||  || |   | || |||||||| ||||||||||||||||| ||||| ||||| |||| || | |  |||   
taattttttttgggatttcgtattgatttgatatcacctgttcccattcctctctaggatgtgaaatttctaat-gtggtcaaatttatctattttctc-agGCCTGATGGAGCCAAGAAGGCTTACGTGAGACTGACAGCAGATTATGATGCGCTTGATGTGGCCAACAAGATCGGTATCATATAAATTTTCTGT-TCAATT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|40336671|gb|CK370741.1|CK370741
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         ACCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTACGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|211206440|gb|FL253315.1|FL253315
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         ACCTGATGGAAAGCAGAAGGCTTACG
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACG
EST: gi|211214149|gb|FL253353.1|FL253353
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         GCCTGATGGANAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|24773553|gb|CA408807.1|CA408807
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         ACCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTACGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|32938358|gb|CF043177.1|CF043177
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         ACCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTACGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|211211588|gb|FL253348.1|FL253348
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         GCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|211209019|gb|FL253330.1|FL253330
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         ACCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTACGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|211269678|gb|FL431150.1|FL431150
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         GCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|24773944|gb|CA409198.1|CA409198
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         ACCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTACGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|5343097|gb|AI795507.1|AI795507
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         ACCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTACGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|33095773|gb|CF055767.1|CF055767
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         ACCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTACGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|40336932|gb|CK371002.1|CK371002
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         ACCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTACGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|7162566|gb|AW520188.1|AW520188
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         ACCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTACGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|211458313|gb|FL472588.1|FL472588
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         GCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|20802907|gb|BQ293957.1|BQ293957
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         ACCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTACGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|211206447|gb|FL253322.1|FL253322
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         GCCTGATGGAAAGAA-A-GGCTTACGTGAAGCTTATG
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATG
EST: gi|31362577|gb|CD446934.1|CD446934
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         ACCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTACGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|211214158|gb|FL253362.1|FL253362
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAAGTCAACACCCTGATCAG                         ACCTGATGGAA
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAA
EST: gi|20336923|gb|BQ172553.1|BQ172553
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         ACATGATGGAAAGAAGAAGGCTTACGTGAAGCTTACGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|211206442|gb|FL253317.1|FL253317
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         ACCTGATGGGAAAGAAGAAGG
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGG-AAAGAAGAAGG
EST: gi|14996984|gb|BI319102.1|BI319102
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         ACCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTACGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|211211583|gb|FL253343.1|FL253343
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         ACCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTACGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|4804301|gb|AI666167.1|AI666167
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         ACCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTACGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|60337088|gb|DN204061.1|DN204061
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         GCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|94474494|gb|EB703452.1|EB703452
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACCCCCTGATCAG                         GCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|211458314|gb|FL472589.1|FL472589
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         GCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|37397383|gb|CF635989.1|CF635989
EST:     CAAGAAGGTCAACACCCTGATCAG                         ACCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTACGCCTGACTATGATGC
genomic: CAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|211211585|gb|FL253345.1|FL253345
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         ACCTGATGGAAAGAAGA-GGCTTACGTGAAGCTTA
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTA
EST: gi|4887531|gb|AI677630.1|AI677630
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         ACCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTACGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|211211584|gb|FL253344.1|FL253344
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         ACCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTACGCCTGACTATGCATG
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATG-ATG
EST: gi|24934734|gb|CA452952.1|CA452952
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         ACCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTACGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|19770427|gb|BQ035148.1|BQ035148
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         ACCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTACGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|37395375|gb|CF634967.1|CF634967
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         ACCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTACGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|50338509|gb|CO533635.1|CO533635
EST:     GGCCAAGAAGGTCAACACCCTGATCAG                         GCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
genomic: GGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|71763303|gb|DR961240.1|DR961240
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACCCCCTGATCAG                         GCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|211211578|gb|FL253338.1|FL253338
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         ACCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTACGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|32863611|gb|CF003293.1|CF003293
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         ACCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTACGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|211209015|gb|FL253326.1|FL253326
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         ACCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTACGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|33093267|gb|CF053261.1|CF053261
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         ACCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTACGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|29945651|gb|CB815748.1|CB815748
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACCCCCTGATCAG                         GCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTAT-CCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|211209023|gb|FL253334.1|FL253334
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         GCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|78026888|gb|DV495275.1|DV495275
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         ACCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTACGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|211206435|gb|FL253310.1|FL253310
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         ACCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTACGCCT
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCT
EST: gi|211214150|gb|FL253354.1|FL253354
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         ACCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTACGCCTGACTATGAGTG
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGA-TG
EST: gi|26557593|gb|CA829828.1|CA829828
EST:     CCAAGAAGATGTCATGACATTCAGGCCAAGAAGGCCAACACCCTGATCAG                         GCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
genomic: TCAAGAAGATGT-ATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|211209012|gb|FL253323.1|FL253323
EST:     GTCMAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         ACCTGATGGAAAGAAGAAGG
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGG
EST: gi|211214153|gb|FL253357.1|FL253357
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         ACCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTACGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|37394957|gb|CF634757.1|CF634757
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         ACCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTACGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|13557792|gb|BG549148.1|BG549148
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         GCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|4826114|gb|AI667742.1|AI667742
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         ACCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTACGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|74243554|gb|DT651468.1|DT651468
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         GCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|76016456|gb|DT943626.1|DT943626
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         GCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|24774087|gb|CA409341.1|CA409341
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         ACCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTACGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|211233325|gb|FL461897.1|FL461897
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         GCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|8103421|gb|AW928060.1|AW928060
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         ACCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTACGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|78113323|gb|DV531715.1|DV531715
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         GCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|211214152|gb|FL253356.1|FL253356
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         GCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|71436907|gb|DR817957.1|DR817957
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         GCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|5439260|gb|AI820181.1|AI820181
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         ACCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTACGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|31362267|gb|CD446624.1|CD446624
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         GCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|4804503|gb|AI665373.2|AI665373
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         ACCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTACGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|12970152|gb|BG266840.1|BG266840
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         ACCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTACGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|211206445|gb|FL253320.1|FL253320
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         GCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGA-TATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|78107256|gb|DV525674.1|DV525674
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         GCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|78113324|gb|DV531716.1|DV531716
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         GCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|32928818|gb|CF033630.1|CF033630
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         ACCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTACGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|16925461|gb|BM078529.1|BM078529
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         GCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|211214160|gb|FL253364.1|FL253364
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         GCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC
EST: gi|211209026|gb|FL253337.1|FL253337
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         GCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGA
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGA
EST: gi|211214154|gb|FL253358.1|FL253358
EST:     GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAG                         ACCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTACGCCTGACTATGATGC
genomic: GTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcattt ... tcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttattatgttgtgcaactgtgagttattcttgattgtgtctgtcctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGCTCTTGATGTGGCCAACAAAATCGGCATCATCTAAAGTTACCGCGTCAGG
                              tcttgat  putative branch site (score: 4)
                                         tctgtcct  putative PPT
     attatgtt  TA-rich tract