1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...caagattcataaatcataataccaatgagatgtcctggtattatgaccatgttattacattttagatgaattcatacttcactcttgtcctttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAAATGTATTTTGATGAACTTCTTCCAAGATTGGTGAAAGAAGGAAGTGATG
species | Zea mays |
transcript | GRMZM2G124365_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAAEST: gi|71304463|gb|DR788345.1|DR788345
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAAEST: gi|32842618|gb|CD982299.1|CD982299
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAAEST: gi|32842683|gb|CD982364.1|CD982364
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: TTTCCAAAGATCTGCCTGAGCCCCGGGTGCCACCTATGCAATACCCAAGG GTTTTGCATCCCATTGCTGATTCTATCAATATEST: gi|32842669|gb|CD982350.1|CD982350
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATAT
EST: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAAEST: gi|67040651|gb|CO466906.1|CO466906
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAAEST: gi|32842206|gb|CD981887.1|CD981887
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAAEST: gi|89763811|gb|DY690849.1|DY690849
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAAEST: gi|32842514|gb|CD982195.1|CD982195
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAAEST: gi|32842415|gb|CD982096.1|CD982096
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAAEST: gi|32842444|gb|CD982125.1|CD982125
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAAEST: gi|211304787|gb|FL143336.1|FL143336
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAAEST: gi|32842790|gb|CD982471.1|CD982471
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAAEST: gi|32842552|gb|CD982233.1|CD982233
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: TTTTCAAGGATCTGCCTGAGCCCCGGGTGCCACCTATGCAATACCCAAGG GTTNTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGGAAEST: gi|32842439|gb|CD982120.1|CD982120
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAAEST: gi|32842376|gb|CD982057.1|CD982057
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAAEST: gi|32842412|gb|CD982093.1|CD982093
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAAEST: gi|67041520|gb|CO467775.1|CO467775
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAAEST: gi|149077332|gb|EE166011.2|EE166011
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAAEST: gi|32842408|gb|CD982089.1|CD982089
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAAEST: gi|148931381|gb|EC874300.2|EC874300
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAAEST: gi|67040128|gb|CO466383.1|CO466383
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAAEST: gi|32842587|gb|CD982268.1|CD982268
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: TTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCGCA-GG GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAEST: gi|211035045|gb|FL415129.1|FL415129
genomic: TTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACC-CAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAA
EST: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG GTTTTGCATCCCATTGCTGATTCTAT
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTAT
accatgttattacattttagatgaattcatacttcactcttgtcctttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAAATGTATTTTGATGAACTTCTTCCAAGATTGGTGAAAGAAGGAAGTGATG
cttcactcttgtcctt CT-rich tract
ttattacattttagat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caagattcataaatcataataccaatgagatgtcctggtattatgaccatgttattacattttagatgaattcatacttcactcttgtcctttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAAATGTATTTTGATGAACTTCTTCCAAGATTGGTGAAAGAAGGAAGTGATG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA